update readme and fix list databases #54
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
name: Tests | |
on: | |
push: | |
branches: | |
- "**" | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
python-version: ["3.7", "3.8", "3.9", "3.10"] | |
steps: | |
- name: Checkout source code | |
uses: actions/checkout@v3 | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install pytest | |
if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
pip install . | |
cd test | |
../bin/agfusion download -g hg19 | |
../bin/agfusion download -s homo_sapiens -r 111 | |
../bin/agfusion download -s mus_musculus -r 84 | |
pyensembl install --release 84 --species mus_musculus | |
pyensembl install --release 75 --species homo_sapiens | |
pyensembl install --release 111 --species homo_sapiens | |
- name: Test with pytest | |
run: | | |
cd test | |
pytest | |
- name: Test build bundle for pip | |
run: | | |
pip install setuptools wheel build | |
python setup.py sdist bdist_wheel |