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vcf2maf v1.6.9

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@ckandoth ckandoth released this 28 Sep 18:15
  • Important: Please re-download this release if you grabbed it before Sept 29th, 2016. There was a bug that prevented the scripts from running on MAFs/VCFs with more than 125,000 variants
  • Entrez_Gene_Id will now be filled as best as possible, using an included mapping from ENSG IDs
  • VEP no longer checks for reference allele mismatches, because vcf2maf/maf2vcf will do it anyway
  • VEP now ignores variant allele change, when looking up known dbSNP/COSMIC variants
  • Now added a column for ExAC_AF_Adj