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@monarch-initiative

Monarch Initiative

Cross-species disease discovery and diagnosis

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  1. mondo mondo Public template

    Mondo Disease Ontology

    Jupyter Notebook 236 54

  2. koza koza Public

    Data transformation framework for LinkML data models

    Python 48 4

  3. MAxO MAxO Public

    Medical action ontology

    HTML 52 4

  4. helpdesk helpdesk Public

    The Monarch Initiative Helpdesk

    7

  5. monarch-ingest monarch-ingest Public

    Data ingest application for Monarch Initiative knowledge graph using Koza

    Python 15 2

  6. monarch-app monarch-app Public

    Monarch Initiative website and API

    Python 18 6

Repositories

Showing 10 of 238 repositories
  • monarch-app Public

    Monarch Initiative website and API

    monarch-initiative/monarch-app’s past year of commit activity
    Python 18 BSD-3-Clause 6 181 (3 issues need help) 11 Updated Nov 26, 2024
  • mondo Public template

    Mondo Disease Ontology

    monarch-initiative/mondo’s past year of commit activity
    Jupyter Notebook 236 CC-BY-4.0 54 373 (2 issues need help) 37 Updated Nov 26, 2024
  • pheval.llm Public

    Analysis of LLMs for Clinical Observations

    monarch-initiative/pheval.llm’s past year of commit activity
    Python 5 BSD-3-Clause 0 9 1 Updated Nov 26, 2024
  • oncoexporter Public

    A package to convert cancer data to GA4GH phenopacket

    monarch-initiative/oncoexporter’s past year of commit activity
    Jupyter Notebook 7 MIT 1 22 3 Updated Nov 26, 2024
  • gpsea Public

    A Python library for discovery of genotype-phenotype associations

    monarch-initiative/gpsea’s past year of commit activity
    Python 5 MIT 1 25 2 Updated Nov 26, 2024
  • phenopacket2prompt Public

    GA4GH Phenopacket to LLM prompt

    monarch-initiative/phenopacket2prompt’s past year of commit activity
    Java 3 MIT 2 3 0 Updated Nov 26, 2024
  • mondo-ingest Public

    Coordinating the mondo-ingest with external sources

    monarch-initiative/mondo-ingest’s past year of commit activity
    Jupyter Notebook 6 3 223 (1 issue needs help) 17 Updated Nov 26, 2024
  • phenio Public

    An integrated ontology for Phenomics

    monarch-initiative/phenio’s past year of commit activity
    Makefile 6 BSD-3-Clause 0 18 0 Updated Nov 25, 2024
  • omim Public

    Data ingest pipeline for OMIM.

    monarch-initiative/omim’s past year of commit activity
    Jupyter Notebook 7 3 66 7 Updated Nov 25, 2024
  • pheval.semphen Public
    monarch-initiative/pheval.semphen’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Nov 25, 2024
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