refactor(deprecations): deprecate flopy.mf6.utils.reference module (#… #3166
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| name: FloPy documentation | |
| on: | |
| push: | |
| pull_request: | |
| branches: | |
| - master | |
| - develop | |
| workflow_dispatch: | |
| inputs: | |
| ref: | |
| description: 'The tag, branch or commit hash to trigger an RTD build for. Branches and tags must be fully formed, e.g. refs/heads/<branch> or refs/tags/<tag> respectively.' | |
| required: false | |
| type: string | |
| default: 'refs/heads/develop' | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }}-${{ github.event_name }} | |
| cancel-in-progress: true | |
| jobs: | |
| set_options: | |
| name: Set release options | |
| runs-on: ubuntu-22.04 | |
| outputs: | |
| ref: ${{ steps.set_ref.outputs.ref }} | |
| sha: ${{ steps.set_sha.outputs.sha }} | |
| steps: | |
| - name: Set ref | |
| id: set_ref | |
| run: | | |
| # if ref was provided explicitly via workflow_dispatch, use it | |
| if [[ ("${{ github.event_name }}" == "workflow_dispatch") && (-n "${{ inputs.ref }}") ]]; then | |
| ref="${{ inputs.ref }}" | |
| echo "using ref $ref from workflow_dispatch" | |
| else | |
| # otherwise use the current branch | |
| ref="${{ github.ref }}" | |
| echo "using current ref $ref" | |
| fi | |
| echo "ref=$ref" >> $GITHUB_OUTPUT | |
| - name: Checkout flopy repo | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ steps.set_ref.outputs.ref }} | |
| - name: Set sha | |
| id: set_sha | |
| run: | | |
| if [[ ("${{ github.event_name }}" == "workflow_dispatch") && (-n "${{ inputs.ref }}") ]]; then | |
| sha=$(git rev-parse ${{ steps.set_ref.outputs.ref }}) | |
| else | |
| sha="${{ github.sha }}" | |
| fi | |
| echo "sha=$sha" >> $GITHUB_OUTPUT | |
| rtd_build: | |
| name: Prepare and test notebooks | |
| needs: set_options | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ ubuntu-latest, macos-latest, windows-latest ] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout flopy repo | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ needs.set_options.outputs.ref }} | |
| - name: Output repo information | |
| run: | | |
| echo $GITHUB_REPOSITORY_OWNER | |
| echo $GITHUB_REPOSITORY | |
| echo $GITHUB_REF | |
| echo $GITHUB_EVENT_NAME | |
| - name: Setup Micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: etc/environment.yml | |
| cache-environment: true | |
| cache-downloads: true | |
| create-args: >- | |
| python=3.12 | |
| init-shell: >- | |
| bash | |
| powershell | |
| - name: Install Python dependencies | |
| run: | | |
| pip install --upgrade pip | |
| pip install . | |
| - name: Workaround OpenGL issue on Linux | |
| if: runner.os == 'Linux' | |
| run: | | |
| # referenced from https://github.com/pyvista/pyvista/blob/main/.github/workflows/vtk-pre-test.yml#L53 | |
| pip uninstall -y vtk | |
| pip install --extra-index-url https://wheels.vtk.org trame vtk-osmesa | |
| - name: Install fonts on Linux | |
| if: runner.os == 'Linux' | |
| run: | | |
| echo ttf-mscorefonts-installer msttcorefonts/accepted-mscorefonts-eula select true | sudo debconf-set-selections | |
| sudo apt-get install ttf-mscorefonts-installer fonts-liberation | |
| sudo rm -rf ~/.cache/matplotlib | |
| - name: Install OpenGL on Windows | |
| if: runner.os == 'Windows' | |
| shell: pwsh | |
| run: | | |
| Set-StrictMode -Version Latest | |
| $ErrorActionPreference = "Stop" | |
| $PSDefaultParameterValues['*:ErrorAction']='Stop' | |
| powershell .github/install_opengl.ps1 | |
| - name: Install Modflow-related executables | |
| uses: modflowpy/install-modflow-action@v1 | |
| - name: Install Modflow dev build executables | |
| uses: modflowpy/install-modflow-action@v1 | |
| with: | |
| repo: modflow6-nightly-build | |
| - name: Install triangle (macOS workaround) | |
| if: runner.os == 'macOS' | |
| uses: modflowpy/install-modflow-action@v1 | |
| with: | |
| repo: executables | |
| ostag: mac | |
| subset: triangle | |
| - name: Run tutorial and example notebooks | |
| working-directory: autotest | |
| run: pytest -v -n auto test_notebooks.py | |
| - name: Upload notebooks artifact for ReadtheDocs | |
| if: | | |
| github.repository_owner == 'modflowpy' && | |
| runner.os == 'Linux' && | |
| ( | |
| github.event_name == 'push' || | |
| github.event_name == 'workflow_dispatch' | |
| ) | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: notebooks-for-${{ needs.set_options.outputs.sha }} | |
| path: .docs/Notebooks/*.ipynb | |
| # trigger rtd if previous job was successful | |
| rtd: | |
| name: Read the Docs trigger | |
| needs: | |
| - rtd_build | |
| - set_options | |
| runs-on: ubuntu-latest | |
| if: | |
| github.repository_owner == 'modflowpy' && | |
| ( | |
| github.event_name == 'push' || | |
| github.event_name == 'workflow_dispatch' | |
| ) | |
| steps: | |
| - name: Trigger RTDs build | |
| uses: dfm/rtds-action@v1 | |
| with: | |
| webhook_url: ${{ secrets.RTDS_WEBHOOK_URL }} | |
| webhook_token: ${{ secrets.RTDS_WEBHOOK_TOKEN }} | |
| commit_ref: ${{ needs.set_options.outputs.ref }} |