Fixes ##1194

mobie · Dec 3, 2024 · 2636091 · 2636091
1 parent c74ff7d
commit 2636091
Showing 1 changed file with 16 additions and 1 deletion.
diff --git a/src/main/java/org/embl/mobie/lib/create/ImagesCreator.java b/src/main/java/org/embl/mobie/lib/create/ImagesCreator.java
@@ -44,6 +44,7 @@
 import net.imglib2.type.numeric.real.FloatType;
 import org.apache.commons.io.FileUtils;
 import org.embl.mobie.MoBIE;
+import org.embl.mobie.MoBIESettings;
 import org.embl.mobie.io.ImageDataFormat;
 import org.embl.mobie.io.ImageDataOpener;
 import org.embl.mobie.io.OMEZarrWriter;
@@ -372,7 +373,7 @@ private void addDefaultTableForImage ( String imageName, String datasetName ) {
             // xml file or zarr file, depending on imageDataFormat
             String filePath = getDefaultLocalImagePath( datasetName, imageName );
             ImageDataFormat imageDataFormat = ImageDataFormat.fromPath( filePath );
-            imageDataFormat.setS3SecretAndAccessKey( MoBIE.getInstance().getSettings().values.getS3AccessAndSecretKey() );
+            addS3keys( imageDataFormat );
             ImageData< ? > imageData = ImageDataOpener.open(
                     filePath,
                     imageDataFormat,
@@ -414,6 +415,20 @@ private void addDefaultTableForImage ( String imageName, String datasetName ) {
         }
     }
 
+    private static void addS3keys( ImageDataFormat imageDataFormat )
+    {
+        MoBIE instance = MoBIE.getInstance();
+        if ( instance != null )
+        {
+            MoBIESettings settings = instance.getSettings();
+            if ( settings != null )
+            {
+                String[] s3AccessAndSecretKey = settings.values.getS3AccessAndSecretKey();
+                imageDataFormat.setS3SecretAndAccessKey( s3AccessAndSecretKey );
+            }
+        }
+    }
+
 
     private void updateTableAndJsonsForNewImage ( String imageName,
                                                   File imageFile,