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demo/outputs |
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# Demo Notebooks Guide | ||
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## Data Extraction | ||
1. Run `extract_meds_data.ipynb` to convert datasets to MEDS format: | ||
- MIMIC-IV demo dataset | ||
- EICU dataset | ||
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Extracted data locations: | ||
- EICU: `demo/work_dir/eicu_demo/meds` | ||
- MIMIC-IV: `demo/work_dir/mimiciv_demo/meds` | ||
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## Task Label Generation | ||
2. Run `aces.ipynb` to generate prediction task labels | ||
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## Model Experiments | ||
3. Run any of these notebooks for model experiments and AUC results: | ||
- `meds_cehrbert.ipynb` - CEHR-BERT implementation | ||
- `meds_tab.ipynb` - Tabular models | ||
- `meds_torch.ipynb` - PyTorch models |
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