MIMIC-IV demo preprocessing #109
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Publish Python 🐍 distribution 📦 to PyPI and TestPyPI | |
| on: push | |
| jobs: | |
| build: | |
| name: Build distribution 📦 | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.10" | |
| - name: Install pypa/build | |
| run: >- | |
| python3 -m | |
| pip install | |
| build | |
| --user | |
| - name: Build a binary wheel and a source tarball | |
| run: python3 -m build | |
| - name: Store the distribution packages | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: python-package-distributions | |
| path: dist/ | |
| publish-to-pypi: | |
| name: >- | |
| Publish Python 🐍 distribution 📦 to PyPI | |
| if: startsWith(github.ref, 'refs/tags/') # only publish to PyPI on tag pushes | |
| needs: | |
| - build | |
| runs-on: ubuntu-latest | |
| environment: | |
| name: pypi | |
| url: https://pypi.org/p/MEDS-transforms # Replace <package-name> with your PyPI project name | |
| permissions: | |
| id-token: write # IMPORTANT: mandatory for trusted publishing | |
| steps: | |
| - name: Download all the dists | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: python-package-distributions | |
| path: dist/ | |
| - name: Publish distribution 📦 to PyPI | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| github-release: | |
| name: >- | |
| Sign the Python 🐍 distribution 📦 with Sigstore | |
| and upload them to GitHub Release | |
| needs: | |
| - publish-to-pypi | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: write # IMPORTANT: mandatory for making GitHub Releases | |
| id-token: write # IMPORTANT: mandatory for sigstore | |
| steps: | |
| - name: Download all the dists | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: python-package-distributions | |
| path: dist/ | |
| - name: Sign the dists with Sigstore | |
| uses: sigstore/[email protected] | |
| with: | |
| inputs: >- | |
| ./dist/*.tar.gz | |
| ./dist/*.whl | |
| - name: Create GitHub Release | |
| env: | |
| GITHUB_TOKEN: ${{ github.token }} | |
| run: >- | |
| gh release create | |
| '${{ github.ref_name }}' | |
| --repo '${{ github.repository }}' | |
| --notes "" | |
| - name: Upload artifact signatures to GitHub Release | |
| env: | |
| GITHUB_TOKEN: ${{ github.token }} | |
| # Upload to GitHub Release using the `gh` CLI. | |
| # `dist/` contains the built packages, and the | |
| # sigstore-produced signatures and certificates. | |
| run: >- | |
| gh release upload | |
| '${{ github.ref_name }}' dist/** | |
| --repo '${{ github.repository }}' |