As part of a new hire workshop series at the Analytic and Translational Genetics Unit (ATGU), Massachusetts General Hospital, we decided to introduce Hail as a genomics analysis tool. This git repo contaisn the workshop materials for analysing common (GWAS) and rare variants (burden test only) using Hail.
Lead: Kumar Veerapen, PhD
TA: Arcturus Wang
Date: July 24th, 2020
Slide deck: Module4_CommonVariantAnalysisHail_KumarVeerapen.pdf
Jupyter notebook: ATGUworkshop_CVanalysis.ipynb
Date: August 12th, 2020
Slide deck: Module9_RareVariantAnalysisHail_KumarVeerapen.pdf
Jupyter notebook: ATGUworkshop_RVanalysis.ipynb
bonus activity: ATGUworkshop_Population_Unmasking.ipynb by Arcturus Wang
The resources folder contains the files needed to run the Jupyter notebooks.
The Dockerfile used to set up the Hail workshop container is found here.