Skip to content

Commit

Permalink
update readme
Browse files Browse the repository at this point in the history
  • Loading branch information
mgaynor1 authored and mgaynor1 committed Feb 12, 2024
1 parent 43c5e36 commit f9e4914
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -18,7 +18,7 @@ nQuack provides data preparation guidance and tools to decrease noise in input d

Our model improves upon the nQuire framework by extending it to higher ploidal levels (pentaploid and hexaploid), correcting the augmented likelihood calculation, implementing more suitable distribution, and allowing additional ‘fixed’ models. We also decrease model selection errors by relying on BIC rather than likelihood ratio tests. To learn more about these methods, see our [Model Options](https://mlgaynor.com/nQuack/articles/ModelOptions.html) guide.

We provide 32 ways to estimates likelihood of a mixture of models with the expected maximization algorithm ([see more here](https://mlgaynor.com/nQuack/articles/ModelOptions.html)) - 8 expected maximization implementations with 4 model types each. In total, nQuack offers 128 mixtures to examine per sample.
We provide 32 ways to estimates likelihood of a mixture of models with the expected maximization algorithm ([see more here](https://mlgaynor.com/nQuack/articles/ModelOptions.html)) - 8 expected maximization implementations with 4 model types each. In total, nQuack offers 128 models.

## Evaluation of nQuack

Expand All @@ -36,7 +36,7 @@ For implementation, see our [Basic Example](https://mlgaynor.com/nQuack/articles

## References

Gaynor ML, Landis JB, O’Connor TK, Laport RG, Doyle JJ, Soltis DE, Soltis PS, and Ponciano JM. nQuack: An R package for predicting ploidy level from sequence data using site-based heterozygosity. In Review. Abstract accepted for Special Issue of Applications in Plant Science.
Gaynor ML, Landis JB, O’Connor TK, Laport RG, Doyle JJ, Soltis DE, Ponciano JM, and Soltis PS. nQuack: An R package for predicting ploidy level from sequence data using site-based heterozygosity. In Review. See preprint here:


## Up Next:
Expand Down

0 comments on commit f9e4914

Please sign in to comment.