install fixing

mgaynor1 · Feb 17, 2024 · dbe0ecb · dbe0ecb
1 parent 0c28be5
commit dbe0ecb
Show file tree

Hide file tree

Showing 7 changed files with 50 additions and 13 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -14,6 +14,7 @@ Suggests:
     testthat (>= 3.0.0)
 Imports: 
     Rcpp (>= 1.0.11),
+    RcppArmadillo (>= 0.12.8.0.0),  
     truncdist,
     data.table,
     foreach, 
@@ -22,13 +23,18 @@ Imports:
     doParallel,
     extraDistr, 
     RcppProgress 
-LinkingTo: Rcpp, RcppArmadillo,  extraDistr, RcppProgress 
+LinkingTo: 
+    Rcpp (>= 1.0.11), 
+    RcppArmadillo (>= 0.12.8.0.0),  
+    extraDistr, 
+    RcppProgress 
 Config/testthat/edition: 3
 SystemRequirements: C++17
 Depends: 
     R (>= 3.5.0)
 LazyData: true
 License: GPL-3
+VignetteBuilder: knitr
 Maintainer: ML Gaynor <[email protected]>
 URL: http://mlgaynor.com/nQuack/ https://github.com/mgaynor1/nQuack
 BugReports: https://github.com/mgaynor1/nQuack/issue

diff --git a/NAMESPACE b/NAMESPACE
@@ -20,7 +20,7 @@ importFrom(stats,rbinom)
 importFrom(stats,runif)
 importFrom(truncdist,rtrunc)
 useDynLib(nQuack)
-importFrom(Rcpp, evalCpp)
+importFrom(RcppArmadillo,armadillo_version)
+importFrom(Rcpp,sourceCpp, evalCpp)
 exportPattern("^[[:alpha:]]+")
-importFrom(Rcpp, sourceCpp)
 import(RcppProgress)
diff --git a/docs/authors.html b/docs/authors.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -7,7 +7,7 @@ articles:
   ModelOptions: ModelOptions.html
   Outliers: Outliers.html
   SimulateData: SimulateData.html
-last_built: 2024-02-13T14:13Z
+last_built: 2024-02-17T21:19Z
 urls:
   reference: http://mlgaynor.com/nQuack/reference
   article: http://mlgaynor.com/nQuack/articles

diff --git a/docs/search.json b/docs/search.json
diff --git a/inst/CITATION b/inst/CITATION
@@ -0,0 +1,25 @@
+bibentry(bibtype    = "Article",
+         title      = "nQuack: An R package for predicting ploidal level from sequence data using site-based heterozygosity",
+          year      = "2024",
+          journal   = "bioRxiv",
+          publisher = "Cold Spring Harbor Laboratory",
+          doi       = "10.1101/2024.02.12.579894",
+          author    = c(person(given  = "Michelle L.",
+                               family = "Gaynor",
+                               email  = "[email protected]"),
+                        person(given  = "Jacob B.",
+                               family = "Landis"),
+                        person(given  = "Timothy K.",
+                               family = "O'Connor"),
+                        person(given  = "Robert G.",
+                               family = "Laport"),
+                        person(given  = "Jeff J.",
+                               family = "Doyle"),
+                        person(given  = "Douglas E.",
+                               family = "Soltis"),
+                        person(given = "José Miguel",
+                                family = "Ponciano"),
+                        person(given  = "Pamela S.",
+                               family = "Soltis")
+                       )
+)
diff --git a/src/.gitignore b/src/.gitignore
@@ -0,0 +1,3 @@
+*.o
+*.so
+*.dll
-Original file line number
+Diff line change
@@ -0,0 +1,3 @@
+    *.o
+    *.so
+    *.dll