Update Makevars based on RcppArmadillo.package.skeleton. Fix png file…

… capitalization, ubuntu is case sensitive.
mgaynor1 · Feb 17, 2024 · 67e92aa · 67e92aa
1 parent 107a0d6
commit 67e92aa
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Showing 6 changed files with 16 additions and 9 deletions.
diff --git a/docs/articles/DataPreparation.html b/docs/articles/DataPreparation.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -7,7 +7,7 @@ articles:
   ModelOptions: ModelOptions.html
   Outliers: Outliers.html
   SimulateData: SimulateData.html
-last_built: 2024-02-17T22:50Z
+last_built: 2024-02-17T23:55Z
 urls:
   reference: http://mlgaynor.com/nQuack/reference
   article: http://mlgaynor.com/nQuack/articles

diff --git a/docs/search.json b/docs/search.json
diff --git a/src/Makevars b/src/Makevars
@@ -1 +1,4 @@
-PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS)
+CXX_STD = CXX17
+
+PKG_CXXFLAGS = $(SHLIB_OPENMP_CXXFLAGS)
+PKG_LIBS = $(SHLIB_OPENMP_CXXFLAGS) $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS)
diff --git a/src/Makevars.win b/src/Makevars.win
@@ -1 +1,4 @@
-PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS)
+CXX_STD = CXX17
+
+PKG_CXXFLAGS = $(SHLIB_OPENMP_CXXFLAGS)
+PKG_LIBS = $(SHLIB_OPENMP_CXXFLAGS) $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS)
diff --git a/vignettes/DataPreparation.Rmd b/vignettes/DataPreparation.Rmd
@@ -14,7 +14,7 @@ resource_files:
   - man/figures/FancyDenoise88069-lowtrunc.png
   - man/figures/DenoiseFancy88069-highertrunc.png
   - man/figures/noTruncBclean.png
-  - man/figures/TruncBclean.png
+  - man/figures/TruncBClean.png
   - man/figures/AllInThisTogether.png
 ---
 
@@ -303,9 +303,10 @@ This is a great alternative to allele truncation. Here is an example of the `Bcl
 ```{r echo=FALSE, out.width="125%", fig.align='center'}
 knitr::include_graphics("../man/figures/noTruncBclean.png",  dpi = 5000)
 ```
+
 This method can also be applied after truncation to catch any extra peak:   
 ```{r echo=FALSE, out.width="125%", fig.align='center'}
-knitr::include_graphics("../man/figures/TruncBclean.png",  dpi = 5000)
+knitr::include_graphics("../man/figures/TruncBClean.png",  dpi = 5000)
 ```