Working around oxpig/ANARCI#43.

merkys · Oct 3, 2022 · e06a1b3 · e06a1b3
1 parent bc56c3a
commit e06a1b3
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/snakefiles/antibody-complexes.smk b/snakefiles/antibody-complexes.smk
@@ -18,7 +18,7 @@ rule extract_complex:
     shell:
         """
         mkdir --parents $(dirname {output})
-        COMPLEX=$(PYTHONPATH=. bin/contact-graph {input.vorocontacts} --pdb {input.pdb} --output-complexes --most-contacts)
+        COMPLEX=$(PYTHONPATH=. bin/contact-graph {input.vorocontacts} --pdb {input.pdb} --output-complexes --most-contacts | grep -v ^Limiting)
         bin/pdb_select --chain $(echo $COMPLEX | cut -c 1) --chain $(echo $COMPLEX | cut -c 2) --chain $(echo $COMPLEX | cut -c 3) {input.pdb} \
             | PYTHONPATH=. bin/pdb_rename_chains --map $(echo $COMPLEX | cut -c 1):A --map $(echo $COMPLEX | cut -c 2):H --map $(echo $COMPLEX | cut -c 3):L > {output}
         echo COMPLX $COMPLEX >> {output}