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Feature/scalable output #177

Merged
merged 23 commits into from
Sep 24, 2024
Merged

Feature/scalable output #177

merged 23 commits into from
Sep 24, 2024

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nlouwen
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@nlouwen nlouwen commented Sep 6, 2024

Bulky update of the output visualization:

  • adds a run table to the database, families and ccs are stored per run
  • output relies on a single index.html, combining the legacy overview and network htmls
  • index.html loads a database file and reads data when necessary
  • adapts bigscape.js to rely on database ids + flexibly loads networks anywhere on a page
  • network now first shows a CC table, where you can render (1) single ccs, (2) all ccs or (3) a filtered selection of ccs.
  • topologically connected ccs are rendered with opacity
  • selected nodes/filtered ccs can be downloaded as a tsv with node info
  • updates Chart.js to newer version chart-4.4.1 (supports deleting and re-rendering pie charts)
  • adds sql-asm.js for SQL database interaction
  • removes creation of js data files (except pfams.js used for coloring pfam domains)

@nlouwen nlouwen self-assigned this Sep 6, 2024
@nlouwen nlouwen marked this pull request as ready for review September 23, 2024 08:00
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@CatarinaCarolina CatarinaCarolina left a comment

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lgtm

@nlouwen nlouwen merged commit dcc9e7a into dev Sep 24, 2024
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@nlouwen nlouwen deleted the feature/scalable-output branch September 24, 2024 07:21
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2 participants