v1.1.3: fixed a small by-one bug when parsing hmmer data

medema-group · Feb 18, 2022 · 7f347c5 · 7f347c5
1 parent a200097
commit 7f347c5
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/bigscape.py b/bigscape.py
@@ -2104,7 +2104,7 @@ def CMD_parser():
                         domain_includelist.txt file", default=False,
                         action="store_true")
 
-    parser.add_argument("--version", action="version", version="%(prog)s 1.1.2 (2021-06-03)")
+    parser.add_argument("--version", action="version", version="%(prog)s 1.1.3 (2022-02-18)")
 
     return parser.parse_args()
 

diff --git a/functions.py b/functions.py
@@ -234,7 +234,7 @@ def save_domain_seqs(filtered_matrix, fasta_dict, domains_folder, outputbase):
 
         domain_file = open(os.path.join(domains_folder, domain + ".fasta"), 'a') #append to existing file
         domain_file.write(">{}:{}:{}\n{}\n".format(header, row[3], row[4],
-            seq[int(row[3]):int(row[4])])) #only use the range of the pfam domain within the sequence
+            seq[int(row[3])-1:int(row[4])])) #only use the range of the pfam domain within the sequence
         domain_file.close()
 
 

diff --git a/html_template/output/index.html b/html_template/output/index.html
@@ -13,7 +13,7 @@
       <div class="top-header" style="padding-top: 0.5em;">
         <img class="bigscape-logo" src="./html_content/img/bigscape.png" style="height: 80px;" alt="BiG-SCAPE">
         <span class="bigscape-title"><a href="https://git.wageningenur.nl/medema-group/BiG-SCAPE">Biosynthetic Genes Similarity Clustering and Prospecting Engine</a><br>
-            <span>Version 1.1.0</span>
+            <span>Version 1.1.3</span>
         </span>
         <!--div id="icons">
           <a href="#"><img src="./img/home.png" alt="home" title="Go to start page"></a>