Merge pull request #66 from mcode/encounter-extractor

Adding Encounter Extractor
mcode · Sep 18, 2023 · e9d77bc · e9d77bc
2 parents 9b8e1f5 + 9d8e69b
commit e9d77bc
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Showing 3 changed files with 17 additions and 10 deletions.
diff --git a/package-lock.json b/package-lock.json
diff --git a/src/ICARECSVClient.js b/src/ICARECSVClient.js
@@ -7,6 +7,7 @@ const {
   CSVClinicalTrialInformationExtractor,
   CSVConditionExtractor,
   CSVCTCAdverseEventExtractor,
+  CSVEncounterExtractor,
   CSVObservationExtractor,
   CSVPatientExtractor,
   CSVProcedureExtractor,
@@ -27,6 +28,7 @@ class ICARECSVClient extends BaseClient {
       CSVClinicalTrialInformationExtractor,
       CSVConditionExtractor,
       CSVCTCAdverseEventExtractor,
+      CSVEncounterExtractor,
       CSVObservationExtractor,
       CSVPatientExtractor,
       CSVProcedureExtractor,
@@ -49,6 +51,7 @@ class ICARECSVClient extends BaseClient {
       { type: 'CSVObservationExtractor', dependencies: ['CSVPatientExtractor'] },
       { type: 'CSVAdverseEventExtractor', dependencies: ['CSVPatientExtractor'] },
       { type: 'CSVCTCAdverseEventExtractor', dependencies: ['CSVPatientExtractor'] },
+      { type: 'CSVEncounterExtractor', dependencies: ['CSVPatientExtractor'] },
     ];
     // Sort extractors based on order and dependencies
     this.extractorConfig = sortExtractors(this.extractorConfig, dependencyInfo);

diff --git a/test/sample-client-data/encounter-information.csv b/test/sample-client-data/encounter-information.csv
@@ -0,0 +1,4 @@
+mrn,encounterId,status,classCode,classSystem,typeCode,typeSystem,startDate,endDate
+123,encounterId-1,arrived,AMB,http://terminology.hl7.org/CodeSystem/v3-ActCode,11429006,http://snomed.info/sct,2020-01-10,2020-01-10
+456,encounterId-2,planned,AMB,http://terminology.hl7.org/CodeSystem/v3-ActCode,270427003,http://snomed.info/sct,2021-02-10,2021-05-12
+789,encounterId-3,cancelled,IMP,http://terminology.hl7.org/CodeSystem/v3-ActCode,,,,