explorations: + obis-top-spp-by-class, fix others

_quarto.yml

@@ -45,6 +45,7 @@ book:
         - explorations/am-fine.qmd
         - explorations/am-envelope.qmd
         - "explorations/sdm-1_predicts.qmd"
+        - "explorations/obis-top-spp-by-class.qmd"
 
 bibliography: references.bib
 

explorations/am-envelope.qmd

@@ -1,12 +1,12 @@
 ---
 description: "Extract and plot AquaMaps environmental envelope, ramp rasters, using R."
 image: "https://marinebon.github.io/aquamaps-downscaled/index_files/figure-html/fig-blue_whale_env_yes-1.png"
-format: 
-  html: 
-    toc: true
+url: "https://marinebon.github.io/aquamaps-downscaled/"
+url-code: "https://github.com/marinebon/aquamaps-downscaled/blob/main/index.qmd"
 categories: 
    - "data: AquaMaps"
    - "tech: R"
+editor: source   
 ---
 
 # AquaMaps Envelope {.unnumbered}
@@ -24,9 +24,8 @@ url_code <- metadata[["url-code"]]
 
 `r descr`
 
-- [{{< fa globe >}} website](`r url_web`)
+-   [{{< fa globe >}} website](`r url_web`)
 
-- [{{< fa brands github >}} `code`](`r url_code`)
+-   [{{< fa brands github >}} `code`](`r url_code`)
 
 ![](`r img`)
-

explorations/am-fine.qmd

@@ -1,15 +1,13 @@
 ---
 description: "Downscale AquaMaps from 1/2º to GEBCO 1/240º using Google Earth Engine and Shiny."
-image: "../figures/experiments/aquamaps-downscaled.png"
+image: "../figures/explorations/aquamaps-downscaled.png"
 url: "https://shiny.marinebon.app/am-fine/"
 url-code: "https://github.com/marinebon/aquamaps-downscaled/tree/main/sp-map"
-format: 
-  html: 
-    toc: true
 categories: 
    - "data: AquaMaps"
    - "tech: Google Earth Engine"
    - "tech: Shiny"
+editor: source   
 ---
 
 # AquaMaps Downscaled {.unnumbered}
@@ -27,9 +25,8 @@ url_code <- metadata[["url-code"]]
 
 `r descr`
 
-- [{{< fa globe >}} website](`r url_web`)
+-   [{{< fa globe >}} website](`r url_web`)
 
-- [{{< fa brands github >}} `code`](`r url_code`)
+-   [{{< fa brands github >}} `code`](`r url_code`)
 
 ![](`r img`)
-

explorations/obis-top-spp-by-class.qmd

@@ -0,0 +1,31 @@
+---
+description: "Extract the species with the most numerous observations by unique Class from the OBIS parquet archive in R."
+image: "../figures/explorations/obis-top-spp-by-class.png"
+url: "https://marinebon.github.io/sdm-explore/explore_obis.html"
+url-code: "https://github.com/marinebon/sdm-explore/blob/main/explore_obis.qmd"
+categories: 
+   - "data: OBIS"
+   - "tech: R"
+editor: source   
+---
+
+# OBIS Top Species by Class {.unnumbered}
+
+```{r}
+#| echo: false
+#| warning: false
+
+library(rmarkdown)
+descr    <- metadata[["description"]]
+img      <- metadata[["image"]]
+url_web  <- metadata[["url"]]
+url_code <- metadata[["url-code"]]
+```
+
+`r descr`
+
+-   [{{< fa globe >}} website](`r url_web`)
+
+-   [{{< fa brands github >}} `code`](`r url_code`)
+
+![](`r img`)

explorations/sdm-1_predicts.qmd

@@ -1,12 +1,12 @@
 ---
 description: "Predict species distribution of N Atlantic right whale using OBIS occcurrences and `predicts` package in R."
-image: "../figures/experiments/sdm-1_predicts.png"
-format: 
-  html: 
-    toc: true
+image: "../figures/explorations/sdm-1_predicts.png"
+url: "https://marinebon.github.io/sdm-explore/sdm_1.html"
+url-code: "https://github.com/marinebon/sdm-explore/blob/main/sdm_1.qmd"
 categories: 
    - "data: OBIS"
    - "tech: R"
+editor: source   
 ---
 
 # SDM using `predicts` in R {.unnumbered}
@@ -24,10 +24,10 @@ url_code <- metadata[["url-code"]]
 
 `r descr`
 
-- [{{< fa globe >}} website](`r url_web`)
+-   [{{< fa globe >}} website](`r url_web`)
 
-- [{{< fa brands github >}} `code`](`r url_code`)
+-   [{{< fa brands github >}} `code`](`r url_code`)
 
 ![](`r img`)
 
-
+![](%60r%20img%60)