+ Share section: Metadata, Portal

_quarto.yml

@@ -46,6 +46,10 @@ book:
         - mosaic.qmd
         - taxa.qmd
         - indicators.qmd
+    - part: "Share"
+      chapters:
+        - share.qmd
+        - metadata.qmd
         - portal.qmd
     - software.qmd
     - organize.qmd

metadata.qmd

@@ -0,0 +1,24 @@
+---
+title: "Metadata"
+subtitle: "Metadata standards for reproducible and stackable SDMs"
+---
+
+What standards [@araújo2019; @kass2023; @zurell2020] are required for models to be hosted?
+
+-   input
+
+    -   input observations
+
+    -   environmental predictors\
+        and range of values in original observations
+
+    -   model type and object
+
+-   outputs
+
+    -   model object
+
+    -   mean prediction
+
+    -   measure(s) of uncertainty\
+        standard error, standard deviation (`sd`), confidence intervals (e.g., 5% and 95%), coefficient of variation (cv)...

organize.qmd

@@ -48,7 +48,7 @@
 
         -   Malin Pinsky
 
-    -   [Lenfest Marine Biodiversity Dialogues](https://www.lenfestocean.org/en/research-projects/marine-biodiversity-dialogues-task-force-i) \
+    -   [Lenfest Marine Biodiversity Dialogues](https://www.lenfestocean.org/en/research-projects/marine-biodiversity-dialogues-task-force-i)\
         *developing a framework to assess the abundance and distribution of marine biodiversity in U.S. (Smithsonian, U of Queensland)*
 
         -   Daniel Dunn

portal.qmd

@@ -1,24 +1,35 @@
 ---
 title: "Portal"
-subtitle: "Portal and metadata standards needed to host and combine for user-specific needs"
-bibliography: references.bib
+subtitle: "Portal to host and combine for user-specific needs"
 ---
 
 Can we supplement an existing portal or create a new one to host different types of model outputs and combine them?
 
-What standards [@araújo2019; @kass2023; @zurell2020] are required for models to be hosted?
+What are publishing workflows for existing portals?
+
+-   Existing portals used to share SDMs
+    -   [AquaMaps](https://aquamaps.org/) *Standardized distribution maps for over 33,500 species of fishes, marine mammals and invertebrates*
 
--   Existing SDM portals
-    -   [AquaMaps](https://aquamaps.org/)
-        *Standardized distribution maps for over 33,500 species of fishes, marine mammals and invertebrates*
     -   [DisMAP](https://apps-st.fisheries.noaa.gov/dismap/)\
         *Distribution Mapping and Analysis Portal*
+
     -   [OBIS-SEAMAP Model Repository](https://seamap.env.duke.edu/models/)\
         *World Data Center for Marine Mammal, Seabird, Sea Turtle, Shark & Ray Distributions*
+
+    -   [NCEI](https://www.ncei.noaa.gov/)\
+        *National Centers for Environmental Information (NOAA)*
+
+    -   [DataONE](https://www.dataone.org/)\
+        *Data Observation Network for Earth*
+
+    -   [ArcGIS Online](https://www.arcgis.com/index.html)
+
+        *Esri's commercial data sharing platform*
 -   Candidate portal\
-    [MarineSpeciesMaps.org](MarineSpeciesMaps.org) \
+    [MarineSpeciesMaps.org](MarineSpeciesMaps.org)\
     BDB registered the domain. Similar to:
     -   **MarineRegions.org**\
         *spatial authority*
     -   **MarineSpecies.org**\
         *taxonomic authority*
+

share.qmd

@@ -0,0 +1,4 @@
+---
+title: "Share"
+subtitle: "Metadata standards and portals to share SDMs"
+---