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marinebon · Mar 15, 2024 · c6a1c03 · c6a1c03
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diff --git a/.nojekyll b/.nojekyll
@@ -1 +1 @@
-dcf96085
+5aa8dec7
diff --git a/MarineSDMs.docx b/MarineSDMs.docx
diff --git a/MarineSDMs.pdf b/MarineSDMs.pdf
diff --git a/abs.html b/abs.html
@@ -2,7 +2,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>
 
 <meta charset="utf-8">
-<meta name="generator" content="quarto-1.4.550">
+<meta name="generator" content="quarto-1.4.551">
 
 <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
 
@@ -795,6 +795,24 @@ <h2 data-number="4.3" class="anchored" data-anchor-id="use-occurrences-from-same
   if (showAllCode) {
     showAllCode.addEventListener("click", toggleCodeHandler(true));
   }
+    var localhostRegex = new RegExp(/^(?:http|https):\/\/localhost\:?[0-9]*\//);
+    var mailtoRegex = new RegExp(/^mailto:/);
+      var filterRegex = new RegExp('/' + window.location.host + '/');
+    var isInternal = (href) => {
+        return filterRegex.test(href) || localhostRegex.test(href) || mailtoRegex.test(href);
+    }
+    // Inspect non-navigation links and adorn them if external
+ 	var links = window.document.querySelectorAll('a[href]:not(.nav-link):not(.navbar-brand):not(.toc-action):not(.sidebar-link):not(.sidebar-item-toggle):not(.pagination-link):not(.no-external):not([aria-hidden]):not(.dropdown-item):not(.quarto-navigation-tool)');
+    for (var i=0; i<links.length; i++) {
+      const link = links[i];
+      if (!isInternal(link.href)) {
+        // undo the damage that might have been done by quarto-nav.js in the case of
+        // links that we want to consider external
+        if (link.dataset.originalHref !== undefined) {
+          link.href = link.dataset.originalHref;
+        }
+      }
+    }
   function tippyHover(el, contentFn, onTriggerFn, onUntriggerFn) {
     const config = {
       allowHTML: true,
@@ -829,7 +847,11 @@ <h2 data-number="4.3" class="anchored" data-anchor-id="use-occurrences-from-same
       try { href = new URL(href).hash; } catch {}
       const id = href.replace(/^#\/?/, "");
       const note = window.document.getElementById(id);
-      return note.innerHTML;
+      if (note) {
+        return note.innerHTML;
+      } else {
+        return "";
+      }
     });
   }
   const xrefs = window.document.querySelectorAll('a.quarto-xref');

diff --git a/calibrate.html b/calibrate.html
@@ -2,7 +2,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>
 
 <meta charset="utf-8">
-<meta name="generator" content="quarto-1.4.550">
+<meta name="generator" content="quarto-1.4.551">
 
 <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
 
@@ -761,6 +761,24 @@
   if (showAllCode) {
     showAllCode.addEventListener("click", toggleCodeHandler(true));
   }
+    var localhostRegex = new RegExp(/^(?:http|https):\/\/localhost\:?[0-9]*\//);
+    var mailtoRegex = new RegExp(/^mailto:/);
+      var filterRegex = new RegExp('/' + window.location.host + '/');
+    var isInternal = (href) => {
+        return filterRegex.test(href) || localhostRegex.test(href) || mailtoRegex.test(href);
+    }
+    // Inspect non-navigation links and adorn them if external
+ 	var links = window.document.querySelectorAll('a[href]:not(.nav-link):not(.navbar-brand):not(.toc-action):not(.sidebar-link):not(.sidebar-item-toggle):not(.pagination-link):not(.no-external):not([aria-hidden]):not(.dropdown-item):not(.quarto-navigation-tool)');
+    for (var i=0; i<links.length; i++) {
+      const link = links[i];
+      if (!isInternal(link.href)) {
+        // undo the damage that might have been done by quarto-nav.js in the case of
+        // links that we want to consider external
+        if (link.dataset.originalHref !== undefined) {
+          link.href = link.dataset.originalHref;
+        }
+      }
+    }
   function tippyHover(el, contentFn, onTriggerFn, onUntriggerFn) {
     const config = {
       allowHTML: true,
@@ -795,7 +813,11 @@
       try { href = new URL(href).hash; } catch {}
       const id = href.replace(/^#\/?/, "");
       const note = window.document.getElementById(id);
-      return note.innerHTML;
+      if (note) {
+        return note.innerHTML;
+      } else {
+        return "";
+      }
     });
   }
   const xrefs = window.document.querySelectorAll('a.quarto-xref');

diff --git a/combine.html b/combine.html
@@ -2,7 +2,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>
 
 <meta charset="utf-8">
-<meta name="generator" content="quarto-1.4.550">
+<meta name="generator" content="quarto-1.4.551">
 
 <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
 
@@ -763,6 +763,24 @@
   if (showAllCode) {
     showAllCode.addEventListener("click", toggleCodeHandler(true));
   }
+    var localhostRegex = new RegExp(/^(?:http|https):\/\/localhost\:?[0-9]*\//);
+    var mailtoRegex = new RegExp(/^mailto:/);
+      var filterRegex = new RegExp('/' + window.location.host + '/');
+    var isInternal = (href) => {
+        return filterRegex.test(href) || localhostRegex.test(href) || mailtoRegex.test(href);
+    }
+    // Inspect non-navigation links and adorn them if external
+ 	var links = window.document.querySelectorAll('a[href]:not(.nav-link):not(.navbar-brand):not(.toc-action):not(.sidebar-link):not(.sidebar-item-toggle):not(.pagination-link):not(.no-external):not([aria-hidden]):not(.dropdown-item):not(.quarto-navigation-tool)');
+    for (var i=0; i<links.length; i++) {
+      const link = links[i];
+      if (!isInternal(link.href)) {
+        // undo the damage that might have been done by quarto-nav.js in the case of
+        // links that we want to consider external
+        if (link.dataset.originalHref !== undefined) {
+          link.href = link.dataset.originalHref;
+        }
+      }
+    }
   function tippyHover(el, contentFn, onTriggerFn, onUntriggerFn) {
     const config = {
       allowHTML: true,
@@ -797,7 +815,11 @@
       try { href = new URL(href).hash; } catch {}
       const id = href.replace(/^#\/?/, "");
       const note = window.document.getElementById(id);
-      return note.innerHTML;
+      if (note) {
+        return note.innerHTML;
+      } else {
+        return "";
+      }
     });
   }
   const xrefs = window.document.querySelectorAll('a.quarto-xref');

diff --git a/ensemble.html b/ensemble.html
@@ -2,7 +2,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>
 
 <meta charset="utf-8">
-<meta name="generator" content="quarto-1.4.550">
+<meta name="generator" content="quarto-1.4.551">
 
 <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
 
@@ -738,6 +738,24 @@
   if (showAllCode) {
     showAllCode.addEventListener("click", toggleCodeHandler(true));
   }
+    var localhostRegex = new RegExp(/^(?:http|https):\/\/localhost\:?[0-9]*\//);
+    var mailtoRegex = new RegExp(/^mailto:/);
+      var filterRegex = new RegExp('/' + window.location.host + '/');
+    var isInternal = (href) => {
+        return filterRegex.test(href) || localhostRegex.test(href) || mailtoRegex.test(href);
+    }
+    // Inspect non-navigation links and adorn them if external
+ 	var links = window.document.querySelectorAll('a[href]:not(.nav-link):not(.navbar-brand):not(.toc-action):not(.sidebar-link):not(.sidebar-item-toggle):not(.pagination-link):not(.no-external):not([aria-hidden]):not(.dropdown-item):not(.quarto-navigation-tool)');
+    for (var i=0; i<links.length; i++) {
+      const link = links[i];
+      if (!isInternal(link.href)) {
+        // undo the damage that might have been done by quarto-nav.js in the case of
+        // links that we want to consider external
+        if (link.dataset.originalHref !== undefined) {
+          link.href = link.dataset.originalHref;
+        }
+      }
+    }
   function tippyHover(el, contentFn, onTriggerFn, onUntriggerFn) {
     const config = {
       allowHTML: true,
@@ -772,7 +790,11 @@
       try { href = new URL(href).hash; } catch {}
       const id = href.replace(/^#\/?/, "");
       const note = window.document.getElementById(id);
-      return note.innerHTML;
+      if (note) {
+        return note.innerHTML;
+      } else {
+        return "";
+      }
     });
   }
   const xrefs = window.document.querySelectorAll('a.quarto-xref');

diff --git a/env.html b/env.html
@@ -2,7 +2,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>
 
 <meta charset="utf-8">
-<meta name="generator" content="quarto-1.4.550">
+<meta name="generator" content="quarto-1.4.551">
 
 <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
 
@@ -927,6 +927,24 @@ <h3 data-number="5.0.3" class="anchored" data-anchor-id="depth-time-varying"><sp
   if (showAllCode) {
     showAllCode.addEventListener("click", toggleCodeHandler(true));
   }
+    var localhostRegex = new RegExp(/^(?:http|https):\/\/localhost\:?[0-9]*\//);
+    var mailtoRegex = new RegExp(/^mailto:/);
+      var filterRegex = new RegExp('/' + window.location.host + '/');
+    var isInternal = (href) => {
+        return filterRegex.test(href) || localhostRegex.test(href) || mailtoRegex.test(href);
+    }
+    // Inspect non-navigation links and adorn them if external
+ 	var links = window.document.querySelectorAll('a[href]:not(.nav-link):not(.navbar-brand):not(.toc-action):not(.sidebar-link):not(.sidebar-item-toggle):not(.pagination-link):not(.no-external):not([aria-hidden]):not(.dropdown-item):not(.quarto-navigation-tool)');
+    for (var i=0; i<links.length; i++) {
+      const link = links[i];
+      if (!isInternal(link.href)) {
+        // undo the damage that might have been done by quarto-nav.js in the case of
+        // links that we want to consider external
+        if (link.dataset.originalHref !== undefined) {
+          link.href = link.dataset.originalHref;
+        }
+      }
+    }
   function tippyHover(el, contentFn, onTriggerFn, onUntriggerFn) {
     const config = {
       allowHTML: true,
@@ -961,7 +979,11 @@ <h3 data-number="5.0.3" class="anchored" data-anchor-id="depth-time-varying"><sp
       try { href = new URL(href).hash; } catch {}
       const id = href.replace(/^#\/?/, "");
       const note = window.document.getElementById(id);
-      return note.innerHTML;
+      if (note) {
+        return note.innerHTML;
+      } else {
+        return "";
+      }
     });
   }
   const xrefs = window.document.querySelectorAll('a.quarto-xref');

diff --git a/evaluate.html b/evaluate.html
@@ -2,7 +2,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>
 
 <meta charset="utf-8">
-<meta name="generator" content="quarto-1.4.550">
+<meta name="generator" content="quarto-1.4.551">
 
 <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
 
@@ -801,6 +801,24 @@ <h2 data-number="11.1" class="anchored" data-anchor-id="more-resources"><span cl
   if (showAllCode) {
     showAllCode.addEventListener("click", toggleCodeHandler(true));
   }
+    var localhostRegex = new RegExp(/^(?:http|https):\/\/localhost\:?[0-9]*\//);
+    var mailtoRegex = new RegExp(/^mailto:/);
+      var filterRegex = new RegExp('/' + window.location.host + '/');
+    var isInternal = (href) => {
+        return filterRegex.test(href) || localhostRegex.test(href) || mailtoRegex.test(href);
+    }
+    // Inspect non-navigation links and adorn them if external
+ 	var links = window.document.querySelectorAll('a[href]:not(.nav-link):not(.navbar-brand):not(.toc-action):not(.sidebar-link):not(.sidebar-item-toggle):not(.pagination-link):not(.no-external):not([aria-hidden]):not(.dropdown-item):not(.quarto-navigation-tool)');
+    for (var i=0; i<links.length; i++) {
+      const link = links[i];
+      if (!isInternal(link.href)) {
+        // undo the damage that might have been done by quarto-nav.js in the case of
+        // links that we want to consider external
+        if (link.dataset.originalHref !== undefined) {
+          link.href = link.dataset.originalHref;
+        }
+      }
+    }
   function tippyHover(el, contentFn, onTriggerFn, onUntriggerFn) {
     const config = {
       allowHTML: true,
@@ -835,7 +853,11 @@ <h2 data-number="11.1" class="anchored" data-anchor-id="more-resources"><span cl
       try { href = new URL(href).hash; } catch {}
       const id = href.replace(/^#\/?/, "");
       const note = window.document.getElementById(id);
-      return note.innerHTML;
+      if (note) {
+        return note.innerHTML;
+      } else {
+        return "";
+      }
     });
   }
   const xrefs = window.document.querySelectorAll('a.quarto-xref');
@@ -1159,7 +1181,7 @@ <h2 data-number="11.1" class="anchored" data-anchor-id="more-resources"><span cl
 </div>
   </div>
 </footer>
-<script>var lightboxQuarto = GLightbox({"selector":".lightbox","loop":false,"closeEffect":"zoom","descPosition":"bottom","openEffect":"zoom"});
+<script>var lightboxQuarto = GLightbox({"descPosition":"bottom","closeEffect":"zoom","selector":".lightbox","loop":false,"openEffect":"zoom"});
 window.onload = () => {
   lightboxQuarto.on('slide_before_load', (data) => {
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diff --git a/explorations.html b/explorations.html
@@ -2,7 +2,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>
 
 <meta charset="utf-8">
-<meta name="generator" content="quarto-1.4.550">
+<meta name="generator" content="quarto-1.4.551">
 
 <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
 
@@ -515,7 +515,7 @@ <h5 class="quarto-listing-category-title">Categories</h5><div class="quarto-list
 
 <div id="listing-listing-experiments" class="quarto-listing quarto-listing-container-grid">
 <div class="list grid quarto-listing-cols-3">
-<div class="g-col-1" data-index="0" data-categories="data: AquaMaps,tech: Google Earth Engine,tech: Shiny" data-listing-file-modified-sort="1708711834784" data-listing-reading-time-sort="1" data-listing-word-count-sort="41">
+<div class="g-col-1" data-index="0" data-categories="data: AquaMaps,tech: Google Earth Engine,tech: Shiny" data-listing-file-modified-sort="1710521010333" data-listing-reading-time-sort="1" data-listing-word-count-sort="41">
 <a href="./explorations/am-fine.html" class="quarto-grid-link">
 <div class="quarto-grid-item card h-100 card-left">
 <p class="card-img-top">
@@ -548,7 +548,7 @@ <h5 class="no-anchor card-title listing-title">
 </div>
 </a>
 </div>
-<div class="g-col-1" data-index="1" data-categories="data: AquaMaps,tech: R" data-listing-file-modified-sort="1708711834783" data-listing-reading-time-sort="1" data-listing-word-count-sort="41">
+<div class="g-col-1" data-index="1" data-categories="data: AquaMaps,tech: R" data-listing-file-modified-sort="1710521010333" data-listing-reading-time-sort="1" data-listing-word-count-sort="41">
 <a href="./explorations/am-envelope.html" class="quarto-grid-link">
 <div class="quarto-grid-item card h-100 card-left">
 <p class="card-img-top">
@@ -578,7 +578,7 @@ <h5 class="no-anchor card-title listing-title">
 </div>
 </a>
 </div>
-<div class="g-col-1" data-index="2" data-categories="data: AquaMaps,tech: DuckDB,tech: R,tech: Shiny" data-listing-file-modified-sort="1708711834784" data-listing-reading-time-sort="1" data-listing-word-count-sort="87">
+<div class="g-col-1" data-index="2" data-categories="data: AquaMaps,tech: DuckDB,tech: R,tech: Shiny" data-listing-file-modified-sort="1710521010333" data-listing-reading-time-sort="1" data-listing-word-count-sort="87">
 <a href="./explorations/am-tree.html" class="quarto-grid-link">
 <div class="quarto-grid-item card h-100 card-left">
 <p class="card-img-top">
@@ -614,7 +614,7 @@ <h5 class="no-anchor card-title listing-title">
 </div>
 </a>
 </div>
-<div class="g-col-1" data-index="3" data-categories="data: OBIS,tech: R" data-listing-file-modified-sort="1708711834784" data-listing-reading-time-sort="1" data-listing-word-count-sort="41">
+<div class="g-col-1" data-index="3" data-categories="data: OBIS,tech: R" data-listing-file-modified-sort="1710521010333" data-listing-reading-time-sort="1" data-listing-word-count-sort="41">
 <a href="./explorations/obis-top-spp-by-class.html" class="quarto-grid-link">
 <div class="quarto-grid-item card h-100 card-left">
 <p class="card-img-top">
@@ -644,7 +644,7 @@ <h5 class="no-anchor card-title listing-title">
 </div>
 </a>
 </div>
-<div class="g-col-1" data-index="4" data-categories="data: OBIS,tech: R,model: Maxent" data-listing-file-modified-sort="1708711834784" data-listing-reading-time-sort="1" data-listing-word-count-sort="41">
+<div class="g-col-1" data-index="4" data-categories="data: OBIS,tech: R,model: Maxent" data-listing-file-modified-sort="1710521010334" data-listing-reading-time-sort="1" data-listing-word-count-sort="41">
 <a href="./explorations/sdm-1_predicts.html" class="quarto-grid-link">
 <div class="quarto-grid-item card h-100 card-left">
 <p class="card-img-top">
@@ -963,6 +963,24 @@ <h5 class="no-anchor card-title listing-title">
   if (showAllCode) {
     showAllCode.addEventListener("click", toggleCodeHandler(true));
   }
+    var localhostRegex = new RegExp(/^(?:http|https):\/\/localhost\:?[0-9]*\//);
+    var mailtoRegex = new RegExp(/^mailto:/);
+      var filterRegex = new RegExp('/' + window.location.host + '/');
+    var isInternal = (href) => {
+        return filterRegex.test(href) || localhostRegex.test(href) || mailtoRegex.test(href);
+    }
+    // Inspect non-navigation links and adorn them if external
+ 	var links = window.document.querySelectorAll('a[href]:not(.nav-link):not(.navbar-brand):not(.toc-action):not(.sidebar-link):not(.sidebar-item-toggle):not(.pagination-link):not(.no-external):not([aria-hidden]):not(.dropdown-item):not(.quarto-navigation-tool)');
+    for (var i=0; i<links.length; i++) {
+      const link = links[i];
+      if (!isInternal(link.href)) {
+        // undo the damage that might have been done by quarto-nav.js in the case of
+        // links that we want to consider external
+        if (link.dataset.originalHref !== undefined) {
+          link.href = link.dataset.originalHref;
+        }
+      }
+    }
   function tippyHover(el, contentFn, onTriggerFn, onUntriggerFn) {
     const config = {
       allowHTML: true,
@@ -997,7 +1015,11 @@ <h5 class="no-anchor card-title listing-title">
       try { href = new URL(href).hash; } catch {}
       const id = href.replace(/^#\/?/, "");
       const note = window.document.getElementById(id);
-      return note.innerHTML;
+      if (note) {
+        return note.innerHTML;
+      } else {
+        return "";
+      }
     });
   }
   const xrefs = window.document.querySelectorAll('a.quarto-xref');