+ mosaic.qmd, ∆ software

_quarto.yml

@@ -7,8 +7,8 @@ project:
     - /.nojekyll
 
 book:
-  title: "SDM-book"
-  subtitle: "Species Distribution Modeling with MarineBON"
+  title: "MarineSDMs"
+  subtitle: "Marine Species Distribution Models"
   author: "Ben Best"
   repo-url: https://github.com/marinebon/sdm-book
   reader-mode: true
@@ -29,6 +29,7 @@ book:
       chapters:
         - prep-data.qmd
         - model.qmd
+        - mosaic.qmd
     - software.qmd
     - organize.qmd
     - references.qmd

index.qmd

@@ -3,6 +3,7 @@
 ```{r}
 librarian::shelf(
   debruine/glossary)
+# check: renv::dependencies()
 
 glossary_path("glossary.yml")
 glossary_popup("click")
@@ -29,7 +30,15 @@ This book is meant to capture the overview and details of modeling species distr
     Other environmental variables besides the initial physiographic (depth) and oceanographic (temperature, chlorophyll, primary productivity and ice) may elicit an improved statistical fit, related to species' environmental niche. Some candidates include: temperature fronts, eddy kinetic energy, distance from shore, distance from shelf.
 
 4.  **Biology**\
-    Where sufficient observations exist, subspecies and populations, should be modeled.
+    Where sufficient observations exist, additional models should be developed highlighting differences between:
+
+    -   **Life stage**, e.g. larval vs adult.
+
+    -   **Gender** where varies, such as male sperm whales being more cosmopolitan.
+
+    -   **Subpopulations** for understanding metapopulation dynamics
+
+    -   **Behavior**, such as migrating, feeding or breeding.
 
 By definition `r glossary("MBON")` is a network, so this is inclusive of and meant for all participants.
 

mosaic.qmd

@@ -0,0 +1,5 @@
+# Mosaic
+
+![Hierarchy of preferred model outputs based on response type and age.](figures/sdm-response-hiearchy.png){#fig-sdm-response-hierarchy}
+
+This is illustrated well by @fig-sdm-response-hierarchy.

organize.qmd

@@ -4,15 +4,25 @@
 
 -   ***Confirmed***
 
-    -   **AquaMaps**\
+    -   [**AquaMaps**](https://www.aquamaps.org/)**\
+        ***distribution maps for over 33,500 species of fishes, marine mammals and invertebrates*\
         contacts:
 
         -   Gabriel Reygondeau (g.reygondeau\@oceans.ubc.ca)
 
     ```{=html}
     <!-- -->
     ```
-    -   **MBON**\
+    -   [**DisMAP**](https://apps-st.fisheries.noaa.gov/dismap/)\
+        *Distribution Mapping and Analysis Portal*\
+        contacts:
+
+        -   Melissa Karp (melissa.karp\@noaa.gov)
+
+        -   Roger Griffis (roger.b.griffis\@noaa.gov)
+
+    -   [**MBON**](https://marinebon.org/)**\
+        ***Marine Biodiversity Observation Network*\
         contacts:
 
         -   Ben Best
@@ -23,35 +33,32 @@
 
         -   Frank Muller-Karger
 
-    -   **OBIS**\
+    -   [**OBIS**](https://obis.org/)**\
+        ***Ocean Biodiversity Information System*\
         contacts:
 
         -   Candido Principe De Souza, Silas (s.principe\@unesco.org)
 
         -   Ward Appeltans (w.appeltans\@unesco.org)
 
-    -   **DisMAP** (Distribution Mapping and Analysis Portal)\
-        contacts:
-
-        -   Melissa Karp (melissa.karp\@noaa.gov)
-
-        -   Roger Griffis (roger.b.griffis\@noaa.gov)
-
 -   ***Proposed***
 
-    -   **FishGLOB** (global bottom trawl)\
+    -   [**FishGLOB**](https://fishglob.sites.ucsc.edu/)\
+        *fish biodiversity under global change (global bottom trawl)*\
         contacts:
 
         -   Malin Pinsky
 
-    -   **MGEL** (Marine Geospatial Ecology Lab, Duke)\
+    -   [**MGEL**](https://mgel.env.duke.edu/)\
+        *Marine Geospatial Ecology Lab, Duke*\
         contacts:
 
         -   Jason Roberts
 
         -   Patrick Halpin
 
-    -   **PMEL** (Pacific Marine Environmental Lab, NOAA)\
+    -   [**PMEL**](https://www.pmel.noaa.gov/)\
+        *Pacific Marine Environmental Lab, NOAA*\
         contacts:
 
         -   Heather Welch