+ authors orcid; glossary cleanup

marinebon · Dec 5, 2023 · 7aec1a9 · 7aec1a9
1 parent dd51acb
commit 7aec1a9
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Showing 8 changed files with 33 additions and 32 deletions.
diff --git a/.Rprofile b/.Rprofile
@@ -1,13 +1,2 @@
 source("renv/activate.R")
-
-if (!"glossary" %in% rownames(installed.packages()))
-  install.packages(
-    "glossary",
-    repos = c(
-      "https://debruine.r-universe.dev",
-      "https://cloud.r-project.org"))
-library(glossary)
-glossary::glossary_path("glossary/glossary.yml")
-glossary::glossary_popup("click")
-glossary::glossary_persistent("glossary/glossary-persistent.yml")
-# Terminal: quarto publish gh-pages
+source("glossary/glossary.R")
diff --git a/_quarto.yml b/_quarto.yml
@@ -7,7 +7,17 @@ project:
 book:
   title: "MarineSDMs"
   subtitle: "Marine Species Distribution Models"
-  author: "Ben Best"
+  author:
+  - name: Benjamin D. Best
+    orcid: 0000-0002-2686-0784
+    email: [email protected]
+    affiliations:
+      - name: EcoQuants LLC
+        address: 211 W Gutierrez St, Unit 12
+        city: Santa Barbara
+        state: CA
+        postal-code: 93101
+      - name: MarineBON
   repo-url: https://github.com/marinebon/sdm-book
   reader-mode: true
   repo-actions: [edit]
@@ -51,8 +61,6 @@ book:
         - share.qmd
         - metadata.qmd
         - portal.qmd
-    - software.qmd
-    - organize.qmd
     - references.qmd
   appendices:
     - glossary.qmd
@@ -62,6 +70,8 @@ book:
         - explorations/am-envelope.qmd
         - "explorations/sdm-1_predicts.qmd"
         - "explorations/obis-top-spp-by-class.qmd"
+    - organize.qmd
+    - software.qmd
 
 bibliography: references.bib
 

diff --git a/glossary.qmd b/glossary.qmd
@@ -1,6 +1,4 @@
----
-title: "Glossary"
----
+# Glossary {.unnumbered}
 
 ```{r}
 #| results="asis"

diff --git a/glossary/glossary.R b/glossary/glossary.R
@@ -0,0 +1,11 @@
+# ran by .Rprofile
+if (!"glossary" %in% rownames(installed.packages()))
+  install.packages(
+    "glossary",
+    repos = c(
+      "https://debruine.r-universe.dev",
+      "https://cloud.r-project.org"))
+library(glossary)
+glossary::glossary_path("glossary/glossary.yml")
+glossary::glossary_popup("click")
+glossary::glossary_persistent("glossary/glossary-persistent.yml")
diff --git a/glossary.css → glossary/glossary.css b/glossary.css → glossary/glossary.css
diff --git a/index.qmd b/index.qmd
@@ -4,18 +4,11 @@
 #| echo: false
 #| eval: false
 
-# in .Rprofile:
-if (!"glossary" %in% rownames(installed.packages()))
-  install.packages(
-    "glossary",
-    repos = c(
-      "https://debruine.r-universe.dev",
-      "https://cloud.r-project.org"))
-library(glossary)
-glossary::glossary_path("glossary/glossary.yml")
-glossary::glossary_popup("click")
-glossary::glossary_persistent("glossary/glossary-persistent.yml")
-# Terminal: quarto publish gh-pages
+# NOTE .Rprofile:
+#   source("renv/activate.R")
+#   source("glossary/glosssary.R")
+# Initialize for Github Action in Terminal:
+#   quarto publish gh-pages
 ```
 
 ## Background

diff --git a/organize.qmd b/organize.qmd
@@ -1,4 +1,4 @@
-# Organize
+# Organize {.unnumbered}
 
 ## Partners
 

diff --git a/software.qmd b/software.qmd
@@ -1,4 +1,4 @@
-# Software
+# Software {.unnumbered}
 
 ## R