comment off organize.qmd

_quarto.yml

@@ -70,7 +70,7 @@ book:
         - explorations/am-envelope.qmd
         - "explorations/sdm-1_predicts.qmd"
         - "explorations/obis-top-spp-by-class.qmd"
-    - organize.qmd
+    # - organize.qmd
     - software.qmd
 
 bibliography: references.bib

index.qmd

@@ -53,7 +53,7 @@ By definition `r glossary("MBON")` is a network, so this is inclusive of and mea
 
 -   **Modeling** methods have dramatically improved over time and are ripe for fresh application. The R package `dismo` originally came came out with an [SDM vignette](https://cran.r-project.org/web/packages/dismo/vignettes/sdm.pdf) as a practical supplement to their excellent review of SDMs [@elith2009] and using the Maxent algorithm [@elith2011]. The raster package furthered that (raster [sdm](https://rspatial.org/raster/sdm/)) and now there's [`terra` sdm](https://rspatial.org/sdm/). Alongside these developments has been a boon of cloud-computing, particularly Google Earth Engine [@gorelick2017; @camposEcologicalNicheModels2023], allowing for dense global raster processing.
 
--   The world is quickly moving towards a future trying to conserve 30% of the oceans by 2030, so called "[**30 by 30**](https://en.wikipedia.org/wiki/30_by_30)". In the U.S., this is [America the Beautiful](https://www.noaa.gov/america-the-beautiful) initiative [@carroll2022]. We need biodiversity indicators to track progress. This push for conservation is driven by increasing impacts of **climate change**, as evidenced by marine heatwaves and shifts in population distributions.
+-   The world is quickly moving towards a future trying to conserve 30% of the oceans by 2030, so called "[**30 by 30**](https://en.wikipedia.org/wiki/30_by_30)". In the U.S., this is [America the Beautiful](https://www.noaa.gov/america-the-beautiful) initiative [@carroll2022] for which `r glossary("MBON")` is well poised to inform [@fautin2010; @muller-karger2018]. We need biodiversity indicators to track progress. This push for conservation is driven by increasing impacts of **climate change**, as evidenced by marine heatwaves and shifts in population distributions.
 
 ## Process
 

references.bib

@@ -365,3 +365,28 @@ @article{carroll2022
 	url = {http://dx.doi.org/10.1126/science.abo0526},
 	langid = {en}
 }
+
+@article{fautin2010,
+	title = {An Overview of Marine Biodiversity in United States Waters},
+	author = {Fautin, Daphne and Dalton, Penelope and Incze, Lewis S. and Leong, Jo-Ann C. and Pautzke, Clarence and Rosenberg, Andrew and Sandifer, Paul and Sedberry, George and Tunnell, John W. and Abbott, Isabella and Brainard, Russell E. and Brodeur, Melissa and Eldredge, Lucius G. and Feldman, Michael and Moretzsohn, Fabio and Vroom, Peter S. and Wainstein, Michelle and Wolff, Nicholas},
+	year = {2010},
+	date = {2010},
+	journal = {PLoS ONE},
+	pages = {e11914},
+	volume = {5},
+	number = {8},
+	doi = {10.1371/journal.pone.0011914},
+	url = {UR  - http://dx.doi.org/10.1371/journal.pone.0011914,http://dx.doi.org/10.1371/journal.pone.0011914}
+}
+
+@article{muller-karger2018,
+	title = {Advancing Marine Biological Observations and Data Requirements of the Complementary Essential Ocean Variables (EOVs) and Essential Biodiversity Variables (EBVs) Frameworks},
+	author = {Muller-Karger, Frank E. and Miloslavich, Patricia and Bax, Nicholas J. and Simmons, Samantha and Costello, Mark J. and Sousa Pinto, Isabel and Canonico, Gabrielle and Turner, Woody and Gill, Michael and Montes, Enrique and Best, Benjamin D. and Pearlman, Jay and Halpin, Patrick and Dunn, Daniel and Benson, Abigail and Martin, Corinne S. and Weatherdon, Lauren V. and Appeltans, Ward and Provoost, Pieter and Klein, Eduardo and Kelble, Christopher R. and Miller, Robert J. and Chavez, Francisco P. and Iken, Katrin and Chiba, Sanae and Obura, David and Navarro, Laetitia M. and Pereira, Henrique M. and Allain, Valerie and Batten, Sonia and Benedetti-Checchi, Lisandro and Duffy, J. Emmett and Kudela, Raphael M. and Rebelo, Lisa-Maria and Shin, Yunne and Geller, Gary},
+	year = {2018},
+	date = {2018},
+	journal = {Frontiers in Marine Science},
+	volume = {5},
+	doi = {10.3389/fmars.2018.00211},
+	url = {https://www.frontiersin.org/articles/10.3389/fmars.2018.00211/full?utm_source=FRN&utm_medium=EMAIL_IRIS&utm_campaign=EMI_XIA_180630_Milestones_CoAuthor_article_page},
+	langid = {English}
+}

renv.lock

@@ -108,9 +108,9 @@
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       "Requirements": [
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         "base64enc",
@@ -119,12 +119,13 @@
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@@ -518,7 +519,7 @@
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@@ -527,7 +528,7 @@
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@@ -776,35 +778,37 @@
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         "R6",
         "RColorBrewer",
+        "cli",
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+        "glue",
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         "lifecycle",
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         "rlang",
         "viridisLite"
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@@ -821,7 +825,7 @@
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@@ -830,7 +834,7 @@
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@@ -916,13 +920,13 @@
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@@ -947,7 +951,7 @@
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@@ -957,7 +961,7 @@
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@@ -993,7 +997,7 @@
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@@ -1034,14 +1038,16 @@
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