Merge pull request #2 from maouw:maouw/issue1

Return to Apptainer

.github/workflows/apptainer-image.yml

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+name: Singularity Build
+on:
+  push:
+    # Edit the branches here if you want to change deploy behavior
+    branches:
+      - main
+      - master
+    tags:
+      - release-*
+
+jobs:
+  build-and-push-image:
+    runs-on: ubuntu-latest
+    name: Build Apptainer image
+    permissions:
+        contents: read
+        packages: write
+    steps:
+      - name: Install Apptainer
+        run: deb=$(curl -w "%{filename_effective}" -LO https://github.com/apptainer/apptainer/releases/download/v1.2.4/apptainer_1.2.4_amd64.deb) && sudo apt install -y "./$deb"; rm -f "$deb"; unset deb
+      - name: Check out code for the container build
+        uses: actions/checkout@v4
+      - name: Build Container
+        run: |
+          apptainer build container.sif Singularity
+          tag=$(echo "${recipe/Singularity\./}")
+          [ "$tag" == "Singularity" ] && tag=latest
+          # Build the container and name by tag
+          echo "Tag is $tag."
+          echo "tag=$tag" >> $GITHUB_ENV
+      - name: Login and Deploy Container
+        run: |
+          apptainer remote login -u ${{ github.actor }} -p ${{ secrets.GITHUB_TOKEN }} oras://ghcr.io
+          apptainer push container.sif oras://ghcr.io/${{ github.repository }}:${tag}

Singularity

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+Bootstrap: docker
+From: mambaorg/micromamba:{{ MICROMAMBA_TAG }}
+
+%arguments
+	MICROMAMBA_TAG=jammy-cuda-12.1.1
+	SLEAP_PYTHON_VERSION=3.7.12
+	SLEAP_VERSION=1.3.3
+
+%environment
+	export MAMBA_DOCKERFILE_ACTIVATE=1
+
+%post
+	micromamba install -y -n base python={{ SLEAP_PYTHON_VERSION }} -c conda-forge -c nvidia -c sleap -c anaconda sleap={{ SLEAP_VERSION }}
+