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Merge pull request #699 from pascal-sauer/develop
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add mail-type FAIL
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@pascal-sauer
pascal-sauer authored Jul 15, 2024
2 parents 65395ee + 94d3965 commit 9488396
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Showing 11 changed files with 16 additions and 16 deletions.
2 changes: 1 addition & 1 deletion scripts/run_submit/submit_medium.sh
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#SBATCH --qos=medium
#SBATCH --job-name=mag-run
#SBATCH --output=slurm.log
#SBATCH --mail-type=END
#SBATCH --mail-type=END,FAIL
#SBATCH --cpus-per-task=3

Rscript submit.R
2 changes: 1 addition & 1 deletion scripts/run_submit/submit_priority.sh
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#SBATCH --qos=priority
#SBATCH --job-name=mag-run
#SBATCH --output=slurm.log
#SBATCH --mail-type=END
#SBATCH --mail-type=END,FAIL
#SBATCH --cpus-per-task=3

Rscript submit.R
2 changes: 1 addition & 1 deletion scripts/run_submit/submit_priority_maxMem.sh
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#SBATCH --qos=priority
#SBATCH --job-name=mag-run
#SBATCH --output=slurm.log
#SBATCH --mail-type=END
#SBATCH --mail-type=END,FAIL
#SBATCH --cpus-per-task=16
#SBATCH --mem-per-cpu=0

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2 changes: 1 addition & 1 deletion scripts/run_submit/submit_short.sh
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#SBATCH --qos=short
#SBATCH --job-name=mag-run
#SBATCH --output=slurm.log
#SBATCH --mail-type=END
#SBATCH --mail-type=END,FAIL
#SBATCH --cpus-per-task=3

Rscript submit.R
2 changes: 1 addition & 1 deletion scripts/run_submit/submit_short_maxMem.sh
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#SBATCH --qos=short
#SBATCH --job-name=mag-run
#SBATCH --output=slurm.log
#SBATCH --mail-type=END
#SBATCH --mail-type=END,FAIL
#SBATCH --cpus-per-task=16
#SBATCH --mem-per-cpu=0

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2 changes: 1 addition & 1 deletion scripts/run_submit/submit_standby.sh
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#SBATCH --qos=standby
#SBATCH --job-name=mag-run
#SBATCH --output=slurm.log
#SBATCH --mail-type=END
#SBATCH --mail-type=END,FAIL
#SBATCH --cpus-per-task=3

Rscript submit.R
2 changes: 1 addition & 1 deletion scripts/run_submit/submit_standby_dayMax.sh
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#SBATCH --qos=standby
#SBATCH --job-name=mag-run
#SBATCH --output=slurm.log
#SBATCH --mail-type=END
#SBATCH --mail-type=END,FAIL
#SBATCH --cpus-per-task=3
#SBATCH --time=24:00:00

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2 changes: 1 addition & 1 deletion scripts/run_submit/submit_standby_maxMem.sh
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#SBATCH --qos=standby
#SBATCH --job-name=mag-run
#SBATCH --output=slurm.log
#SBATCH --mail-type=END
#SBATCH --mail-type=END,FAIL
#SBATCH --cpus-per-task=16
#SBATCH --mem-per-cpu=0

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2 changes: 1 addition & 1 deletion scripts/run_submit/submit_standby_maxMem_dayMax.sh
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#SBATCH --qos=standby
#SBATCH --job-name=mag-run
#SBATCH --output=slurm.log
#SBATCH --mail-type=END
#SBATCH --mail-type=END,FAIL
#SBATCH --cpus-per-task=16
#SBATCH --mem-per-cpu=0
#SBATCH --time=24:00:00
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8 changes: 4 additions & 4 deletions scripts/slurmOutput.yml
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slurmjobs:
SLURM standby: "sbatch --job-name=scripts-output --output=logs/out-%NAME-%j.out --error=logs/out-%NAME-%j.err --mail-type=END --time=200 --mem-per-cpu=8000 --wrap=\"Rscript %SCRIPT\" --qos=standby --time=24:00:00"
SLURM standby maxMem: "sbatch --job-name=scripts-output --output=logs/out-%NAME-%j.out --error=logs/out-%NAME-%j.err --mail-type=END --time=200 --mem-per-cpu=8000 --wrap=\"Rscript %SCRIPT\" --qos=standby --time=24:00:00 --mem-per-cpu=0 --cpus-per-task=16"
SLURM priority: "sbatch --job-name=scripts-output --output=logs/out-%NAME-%j.out --error=logs/out-%NAME-%j.err --mail-type=END --time=200 --mem-per-cpu=8000 --wrap=\"Rscript %SCRIPT\" --qos=priority"
SLURM priority maxMem: "sbatch --job-name=scripts-output --output=logs/out-%NAME-%j.out --error=logs/out-%NAME-%j.err --mail-type=END --time=200 --mem-per-cpu=8000 --wrap=\"Rscript %SCRIPT\" --qos=priority --mem-per-cpu=0 --cpus-per-task=16"
SLURM standby: "sbatch --job-name=scripts-output --output=logs/out-%NAME-%j.out --error=logs/out-%NAME-%j.err --mail-type=END,FAIL --time=200 --mem-per-cpu=8000 --wrap=\"Rscript %SCRIPT\" --qos=standby --time=24:00:00"
SLURM standby maxMem: "sbatch --job-name=scripts-output --output=logs/out-%NAME-%j.out --error=logs/out-%NAME-%j.err --mail-type=END,FAIL --time=200 --mem-per-cpu=8000 --wrap=\"Rscript %SCRIPT\" --qos=standby --time=24:00:00 --mem-per-cpu=0 --cpus-per-task=16"
SLURM priority: "sbatch --job-name=scripts-output --output=logs/out-%NAME-%j.out --error=logs/out-%NAME-%j.err --mail-type=END,FAIL --time=200 --mem-per-cpu=8000 --wrap=\"Rscript %SCRIPT\" --qos=priority"
SLURM priority maxMem: "sbatch --job-name=scripts-output --output=logs/out-%NAME-%j.out --error=logs/out-%NAME-%j.err --mail-type=END,FAIL --time=200 --mem-per-cpu=8000 --wrap=\"Rscript %SCRIPT\" --qos=priority --mem-per-cpu=0 --cpus-per-task=16"
6 changes: 3 additions & 3 deletions scripts/slurmStart.yml
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slurmjobs:
SLURM priority: "sbatch --job-name=%NAME --output=logs/%NAME-%j.out --mail-type=END --wrap=\"Rscript %SCRIPT\" --qos=priority --cpus-per-task=3"
SLURM standby: "sbatch --job-name=%NAME --output=logs/%NAME-%j.out --mail-type=END --wrap=\"Rscript %SCRIPT\" --qos=standby --cpus-per-task=3"
SLURM medium: "sbatch --job-name=%NAME --output=logs/%NAME-%j.out --mail-type=END --wrap=\"Rscript %SCRIPT\" --qos=medium --cpus-per-task=3"
SLURM priority: "sbatch --job-name=%NAME --output=logs/%NAME-%j.out --mail-type=END,FAIL --wrap=\"Rscript %SCRIPT\" --qos=priority --cpus-per-task=3"
SLURM standby: "sbatch --job-name=%NAME --output=logs/%NAME-%j.out --mail-type=END,FAIL --wrap=\"Rscript %SCRIPT\" --qos=standby --cpus-per-task=3"
SLURM medium: "sbatch --job-name=%NAME --output=logs/%NAME-%j.out --mail-type=END,FAIL --wrap=\"Rscript %SCRIPT\" --qos=medium --cpus-per-task=3"

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