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Merge pull request #712 from jdrtommey/develop
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remove partition information from job submission scripts
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@jdrtommey
jdrtommey authored Aug 8, 2024
2 parents 001e999 + a239e10 commit 5843931
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Showing 8 changed files with 6 additions and 12 deletions.
1 change: 0 additions & 1 deletion scripts/run_submit/submit_priority.sh
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@@ -1,7 +1,6 @@
#!/bin/bash

#SBATCH --qos=priority
#SBATCH --partition=priority
#SBATCH --job-name=mag-run
#SBATCH --output=slurm.log
#SBATCH --mail-type=END,FAIL
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1 change: 0 additions & 1 deletion scripts/run_submit/submit_priority_maxMem.sh
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@@ -1,7 +1,6 @@
#!/bin/bash

#SBATCH --qos=priority
#SBATCH --partition=priority
#SBATCH --job-name=mag-run
#SBATCH --output=slurm.log
#SBATCH --mail-type=END,FAIL
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1 change: 0 additions & 1 deletion scripts/run_submit/submit_standby.sh
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@@ -1,7 +1,6 @@
#!/bin/bash

#SBATCH --qos=standby
#SBATCH --partition=priority
#SBATCH --job-name=mag-run
#SBATCH --output=slurm.log
#SBATCH --mail-type=END,FAIL
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1 change: 0 additions & 1 deletion scripts/run_submit/submit_standby_dayMax.sh
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@@ -1,7 +1,6 @@
#!/bin/bash

#SBATCH --qos=standby
#SBATCH --partition=priority
#SBATCH --job-name=mag-run
#SBATCH --output=slurm.log
#SBATCH --mail-type=END,FAIL
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1 change: 0 additions & 1 deletion scripts/run_submit/submit_standby_maxMem.sh
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Original file line number Diff line number Diff line change
@@ -1,7 +1,6 @@
#!/bin/bash

#SBATCH --qos=standby
#SBATCH --partition=priority
#SBATCH --job-name=mag-run
#SBATCH --output=slurm.log
#SBATCH --mail-type=END,FAIL
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1 change: 0 additions & 1 deletion scripts/run_submit/submit_standby_maxMem_dayMax.sh
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Original file line number Diff line number Diff line change
@@ -1,7 +1,6 @@
#!/bin/bash

#SBATCH --qos=standby
#SBATCH --partition=priority
#SBATCH --job-name=mag-run
#SBATCH --output=slurm.log
#SBATCH --mail-type=END,FAIL
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8 changes: 4 additions & 4 deletions scripts/slurmOutput.yml
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@@ -1,5 +1,5 @@
slurmjobs:
SLURM standby: "sbatch --job-name=scripts-output --output=logs/out-%NAME-%j.out --error=logs/out-%NAME-%j.err --mail-type=END,FAIL --time=200 --mem-per-cpu=8000 --wrap=\"Rscript %SCRIPT\" --qos=standby --partition=priority --time=24:00:00"
SLURM standby maxMem: "sbatch --job-name=scripts-output --output=logs/out-%NAME-%j.out --error=logs/out-%NAME-%j.err --mail-type=END,FAIL --time=200 --mem-per-cpu=8000 --wrap=\"Rscript %SCRIPT\" --qos=standby --partition=priority --time=24:00:00 --mem-per-cpu=0 --cpus-per-task=16"
SLURM priority: "sbatch --job-name=scripts-output --output=logs/out-%NAME-%j.out --error=logs/out-%NAME-%j.err --mail-type=END,FAIL --time=200 --mem-per-cpu=8000 --wrap=\"Rscript %SCRIPT\" --qos=priority --partition=priority"
SLURM priority maxMem: "sbatch --job-name=scripts-output --output=logs/out-%NAME-%j.out --error=logs/out-%NAME-%j.err --mail-type=END,FAIL --time=200 --mem-per-cpu=8000 --wrap=\"Rscript %SCRIPT\" --qos=priority --partition=priority --mem-per-cpu=0 --cpus-per-task=16"
SLURM standby: "sbatch --job-name=scripts-output --output=logs/out-%NAME-%j.out --error=logs/out-%NAME-%j.err --mail-type=END,FAIL --time=200 --mem-per-cpu=8000 --wrap=\"Rscript %SCRIPT\" --qos=standby --time=24:00:00"
SLURM standby maxMem: "sbatch --job-name=scripts-output --output=logs/out-%NAME-%j.out --error=logs/out-%NAME-%j.err --mail-type=END,FAIL --time=200 --mem-per-cpu=8000 --wrap=\"Rscript %SCRIPT\" --qos=standby --time=24:00:00 --mem-per-cpu=0 --cpus-per-task=16"
SLURM priority: "sbatch --job-name=scripts-output --output=logs/out-%NAME-%j.out --error=logs/out-%NAME-%j.err --mail-type=END,FAIL --time=200 --mem-per-cpu=8000 --wrap=\"Rscript %SCRIPT\" --qos=priority"
SLURM priority maxMem: "sbatch --job-name=scripts-output --output=logs/out-%NAME-%j.out --error=logs/out-%NAME-%j.err --mail-type=END,FAIL --time=200 --mem-per-cpu=8000 --wrap=\"Rscript %SCRIPT\" --qos=priority --mem-per-cpu=0 --cpus-per-task=16"
4 changes: 2 additions & 2 deletions scripts/slurmStart.yml
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@@ -1,4 +1,4 @@
slurmjobs:
SLURM priority: "sbatch --job-name=%NAME --output=logs/%NAME-%j.out --mail-type=END,FAIL --wrap=\"Rscript %SCRIPT\" --qos=priority --partition=priority --cpus-per-task=3"
SLURM standby: "sbatch --job-name=%NAME --output=logs/%NAME-%j.out --mail-type=END,FAIL --wrap=\"Rscript %SCRIPT\" --qos=standby --partition=priority --cpus-per-task=3"
SLURM priority: "sbatch --job-name=%NAME --output=logs/%NAME-%j.out --mail-type=END,FAIL --wrap=\"Rscript %SCRIPT\" --qos=priority --cpus-per-task=3"
SLURM standby: "sbatch --job-name=%NAME --output=logs/%NAME-%j.out --mail-type=END,FAIL --wrap=\"Rscript %SCRIPT\" --qos=standby --cpus-per-task=3"
SLURM medium: "sbatch --job-name=%NAME --output=logs/%NAME-%j.out --mail-type=END,FAIL --wrap=\"Rscript %SCRIPT\" --qos=medium --cpus-per-task=3"

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