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Interpretability module: sparse linear models via LASSO #120

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Jun 11, 2024
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1ccbbce
Added Lasso notebook
pietronvll Jan 17, 2024
b345809
add lasso module
luigibonati Jan 30, 2024
e51871b
uploaded drafts of lasso notebooks
luigibonati Jan 30, 2024
df937a9
Merge remote-tracking branch 'origin/main' into interpretability
luigibonati Jun 5, 2024
e80ca9c
create explain submodule
luigibonati Jun 5, 2024
5489c4b
fix tests and warnings
luigibonati Jun 6, 2024
f54428b
add lasso regtests
luigibonati Jun 6, 2024
55ca602
fix return plot functions
luigibonati Jun 6, 2024
e71ff1f
updated stateinterpreter tutorial
luigibonati Jun 6, 2024
91fdf8c
updated lasso tutorials
luigibonati Jun 6, 2024
0192845
updated docs
luigibonati Jun 6, 2024
2aec410
fix doc and tutorials
luigibonati Jun 6, 2024
b8bb9f7
fix loops in lasso
luigibonati Jun 6, 2024
343fea6
updated documentation
luigibonati Jun 6, 2024
90fca93
fix indentation in committor notebook
luigibonati Jun 6, 2024
d117fab
fixed committor notebook
luigibonati Jun 6, 2024
9b7a217
long training for committor
luigibonati Jun 6, 2024
314e595
Fixed tutorials
EnricoTrizio Jun 6, 2024
f712c10
Merge branch 'interpretability' of https://github.com/luigibonati/mlc…
EnricoTrizio Jun 6, 2024
6ea925f
Plot longer training results in preview
EnricoTrizio Jun 6, 2024
35c5c45
fix lasso tutorial
luigibonati Jun 11, 2024
15ef1d9
raise error in lasso regression if target is not scalar
luigibonati Jun 11, 2024
5b26950
improved plot_features_distribution
luigibonati Jun 11, 2024
9b09f4e
run sphinx to update doc
luigibonati Jun 11, 2024
e3aec8f
remove utils
luigibonati Jun 11, 2024
71ad599
fix sensitivity notebook
luigibonati Jun 11, 2024
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140 changes: 87 additions & 53 deletions docs/notebooks/tutorials/adv_features_relevances.ipynb

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762 changes: 762 additions & 0 deletions docs/notebooks/tutorials/expl_lasso.ipynb

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854 changes: 854 additions & 0 deletions docs/notebooks/tutorials/expl_stateinterpreter.ipynb

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9 changes: 9 additions & 0 deletions mlcolvar/explain/__init__.py
Original file line number Diff line number Diff line change
@@ -0,0 +1,9 @@
__all__ = [
"sensitivity_analysis",
"plot_sensitivity",
"plot_features_distribution"
]

from .sensitivity import *
from .utils import *
# from .lasso import * # lasso requires additional dependencies
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