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Extension of transform module #972

Extension of transform module

Extension of transform module #972

Workflow file for this run

name: CI
on:
# GitHub has started calling new repo's first branch "main" https://github.com/github/renaming
# The cookiecutter uses the "--initial-branch" flag when it runs git-init
push:
branches:
- "main"
- "lightning"
pull_request:
branches:
- "main"
- "lightning"
schedule:
# Weekly tests run on main by default:
# Scheduled workflows run on the latest commit on the default or base branch.
# (from https://help.github.com/en/actions/reference/events-that-trigger-workflows#scheduled-events-schedule)
- cron: "0 0 * * 0"
jobs:
test:
name: Test on ${{ matrix.os }}, Python ${{ matrix.python-version }}
runs-on: ${{ matrix.os }}
strategy:
matrix:
# os: [macOS-latest, ubuntu-latest, windows-latest] # TODO use this when macOS-latest becomes stable again
os: [macOS-13, ubuntu-latest, windows-latest]
python-version: [3.8, 3.9, "3.10"]
steps:
- uses: actions/checkout@v3
- name: Additional info about the build
shell: bash
run: |
uname -a
df -h
ulimit -a
# More info on options: https://github.com/mamba-org/provision-with-micromamba#migration-to-setup-micromamba%60
- uses: mamba-org/setup-micromamba@main
with:
environment-file: devtools/conda-envs/test_env.yaml
environment-name: test
# channels: conda-forge,defaults
create-args: >-
python=${{ matrix.python-version }}
- name: Install package
# conda setup requires this special shell
shell: bash -l {0}
run: |
python -m pip install -e . --no-deps
micromamba list
- name: Run tests
# conda setup requires this special shell
shell: bash -l {0}
run: |
pytest -v --cov=mlcolvar --cov-report=xml --color=yes mlcolvar/tests/
- name: Run notebook tests
# conda setup requires this special shell
shell: bash -l {0}
if: contains( matrix.os, 'ubuntu' )
run: |
pytest -v --nbmake docs/notebooks/ --ignore=docs/notebooks/tutorials/data/ --cov=mlcolvar --cov-append --cov-report=xml --color=yes
- name: CodeCov
if: contains( matrix.os, 'ubuntu' )
uses: codecov/codecov-action@v3
with:
token: ${{ secrets.CODECOV_TOKEN }}
file: ./coverage.xml
flags: codecov
name: codecov-${{ matrix.os }}-py${{ matrix.python-version }}