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8. References
Carroll, Laura M., Rachel A. Cheng, Martin Wiedmann, Jasna Kovac. 2021. "Keeping up with the Bacillus cereus group: taxonomy through the genomics era and beyond." Crit Rev Food Sci Nutr 1-26. doi: 10.1080/10408398.2021.1916735.
Carroll, Laura M., Martin Wiedmann, Jasna Kovac. 2020. "Proposal of a Taxonomic Nomenclature for the Bacillus cereus Group Which Reconciles Genomic Definitions of Bacterial Species with Clinical and Industrial Phenotypes." mBio 11(1): e00034-20; DOI: 10.1128/mBio.00034-20.
Carroll, Laura M., Rachel A. Cheng, Jasna Kovac. 2020. "No Assembly Required: Using BTyper3 to Assess the Congruency of a Proposed Taxonomic Framework for the Bacillus cereus group with Historical Typing Methods." Frontiers in Microbiology 11: 580691; DOI: 10.3389/fmicb.2020.580691.
Camacho, Christiam, et al. BLAST+: architecture and applications. BMC Bioinformatics 2009 10:421.
Cock, Peter J., et al. Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics 2009 June 1; 25(11): 1422-1423.
Jain, Chirag, et al. High-throughput ANI Analysis of 90K Prokaryotic Genomes Reveals Clear Species Boundaries. Nature Communications 9(1):5114. doi: 10.1038/s41467-018-07641-9.
Gee, JE, et al. Draft Genome Sequence of Bacillus cereus Strain BcFL2013, a Clinical Isolate Similar to G9241. Genome Announcements 2014 May 29;2(3).
Disclaimer: BTyper3 is pretty neat! However, no tool is perfect, and BTyper3 cannot definitively prove whether an isolate is pathogenic or not. As always, interpret your results with caution. We are not responsible for taxonomic misclassifications, misclassifications of an isolate's pathogenic potential or industrial utility, and/or misinterpretations (biological, statistical, or otherwise) of BTyper3 results.