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Update README.md
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npbhavya authored Oct 3, 2024
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Expand Up @@ -93,10 +93,10 @@ As an example of installing the sphae .sif file and running sphae v1.4.4 with S
TMPDIR=<where your tmpdir lives>
IMAGEDIR-<where you want the image to live>
singularity pull --tmpdir=$TMPDIR --dir $IMAGEDIR docker://quay.io/gbouras13/sphae:1.4.4
singularity exec sphae_1.4.4.sif sphae --help
singularity exec sphae_1.4.4.sif sphae run --help
singularity exec sphae_1.4.4.sif sphae install --help
singularity pull --tmpdir=$TMPDIR --dir $IMAGEDIR docker://npbhavya/sphae:latest
singularity exec sphae_latest.sif sphae --help
singularity exec sphae_latest.sif sphae run --help
singularity exec sphae_latest.sif sphae install --help
```

You will still need to install the databases with `sphae install` as outlined below.
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