AutoPhispyPIP

This release should automatically create a pip release!

PhiSpy with Colour

A minor bump that removes an edge-case error in the colour definition testing

Dropped prophages

This release adds an option to retain dropped putative prophage regions in the GFF3/GenBank files so you can explore them manually e.g. in artemis

v4.2.15 great gff3

We have added gff3 support to write the whole genome, including the annotated prophage regions.

v4.2.12 tidying up

Most of the changes in the new version are minor changes that all add up to cleaner code and better results

ValueError Free Release

Fixing the ValueError error that plagues biopython

Version 4.1.18 improved metrics parsing

The version solves an issue with parsing the metrics from the command line.

Version 4.1.20 Improved metrics parsing

Resolved parsing the --metrics options, so you can either add one --metrics flag and list all your options, e.g.

PhiSpy.py --metrics shannon_slope gc_skew

or provide each one with its own flad, e.g.:

PhiSpy.py --metrics shannon_slope --metrics gc_skew

This is a combination of using argparse append and then iterating the list.

Version 4.1.16 many enhancements

Lots of enhancements and tweaks since the last release. This version is also available in PyPi and Conda.

Version 4.0.0 release candidate 1

This is the first release candidate of version 4 that includes a suite of new features and outputs.