Adding dropped phages

linsalrob · Jul 5, 2021 · 78025fc · 78025fc
1 parent 5671e35
commit 78025fc
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Showing 2 changed files with 1 addition and 1 deletion.
diff --git a/PhiSpyModules/evaluation.py b/PhiSpyModules/evaluation.py
@@ -279,7 +279,6 @@ def fixing_start_end(**kwargs):
     #                                                                                     #
     #######################################################################################
     temppp = {}
-    self.droppedpp = {}
     j = 1
     dropped_j  = 1
     prophagesummary = []

diff --git a/PhiSpyModules/main.py b/PhiSpyModules/main.py
@@ -105,6 +105,7 @@ def main(argv):  #organismPath, output_dir, trainingFlag, INSTALLATION_DIR, eval
     #         do evaluation              #
     ######################################
     PhiSpyModules.log_and_message('Evaluating...', c="GREEN", stderr=True, stdout=False, quiet=args_parser.quiet)
+    args_parser.droppedpp = {} # the dropped prophages. These are added in fixing_start_end
     args_parser.pp = PhiSpyModules.fixing_start_end(**vars(args_parser))
 
     ######################################