-
Notifications
You must be signed in to change notification settings - Fork 4
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
Showing
2 changed files
with
18 additions
and
0 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,18 @@ | ||
{ | ||
"type": "techreport", | ||
"title": "PSL-GWAS: A Microbial GWAS Method Using Statistical Relational Learning", | ||
"authors": [ | ||
"Alex Miller", "Eriq Augustine", "Elijah Pandolfo", "Lise Getoor" | ||
], | ||
"venue": "University of California, Santa Cruz", | ||
"year": "2023", | ||
"publisher": "UCSC", | ||
"address": "Santa Cruz, CA, USA", | ||
"links": [ | ||
{ | ||
"label": "paper", | ||
"href": "/assets/resources/miller-techreport23.pdf" | ||
} | ||
], | ||
"abstract": "Microbial genome-wide association studies (mGWAS) are a new, quickly growing area of research that aims to identify genetic variants that are associated with phenotypes of interest in microbes. We introduce PSL-GWAS, a flexible mGWAS method that makes use of the statistical relational learning framework Probabilistic Soft Logic (PSL.) Our method can be readily adapted to incorporate domain knowledge or the output of other mGWAS methods. We show that PSL-GWAS performs comparably to well-established mGWAS methods on a dataset of 355 E. Coli samples and antibiotic resistance phenotypes." | ||
} |
Binary file not shown.