Improve generator.md logging #284
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| # This is testing the python versions *other than* the | ||
| # one in the QUIP Docker, which is 3.7.10 at the time | ||
| # of writing this. Coverage is disabled. | ||
| name: Build docs | ||
| # on push to main, manual trigger, and pull request. | ||
| # See below for depdendent deploy job that only runs if event is push | ||
| on: | ||
| push: | ||
| branches: | ||
| - main | ||
| workflow_dispatch: | ||
| pull_request: | ||
| jobs: | ||
| build-docs: | ||
| runs-on: ubuntu-latest | ||
| strategy: | ||
| matrix: | ||
| python-version: [ "3.9" ] | ||
| max-parallel: 5 | ||
| env: | ||
| coverage-on-version: "3.9" | ||
| use-mpi: True | ||
| defaults: | ||
| run: | ||
| shell: bash -l {0} | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - name: Set up python ${{ matrix.python-version }} via conda | ||
| uses: conda-incubator/setup-miniconda@v3 | ||
| with: | ||
| auto-update-conda: true | ||
| python-version: ${{ matrix.python-version }} | ||
| - name: Check python version | ||
| run: | | ||
| which python3 | ||
| python3 --version | ||
| - name: Install dependencies from pip | ||
| run: python3 -m pip install wheel setuptools numpy scipy click matplotlib pyyaml spglib rdkit flake8 pytest pytest-cov requests nbsphinx ipython | ||
| - name: Install latest ASE from gitlab | ||
| run: | | ||
| python3 -m pip install git+https://gitlab.com/ase/ase.git | ||
| echo -n "ASE VERSION " | ||
| python3 -c "import ase; print(ase.__file__, ase.__version__)" | ||
| - name: Install intel-oneapi-mkl for phono3py | ||
| run: | | ||
| # based on | ||
| # https://www.intel.com/content/www/us/en/developer/tools/oneapi/onemkl-download.html?operatingsystem=linux&distributions=aptpackagemanager | ||
| # download the key to system keyring | ||
| wget -O- https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | gpg --dearmor | sudo tee /usr/share/keyrings/oneapi-archive-keyring.gpg > /dev/null | ||
| # add signed entry to apt sources and configure the APT client to use Intel repository: | ||
| echo "deb [signed-by=/usr/share/keyrings/oneapi-archive-keyring.gpg] https://apt.repos.intel.com/oneapi all main" | sudo tee /etc/apt/sources.list.d/oneAPI.list | ||
| sudo apt update | ||
| sudo apt install intel-oneapi-mkl | ||
| sudo apt install intel-oneapi-mkl-devel | ||
| - name: Install phono3py from source | ||
| run: | | ||
| # find mklvars | ||
| for pkg in $( apt list --installed | fgrep "installed" | fgrep "mkl" | sed "s#/.*##" ); do | ||
| if dpkg -L $pkg | egrep -q 'vars.sh$'; then | ||
| mklvars=$( dpkg -L $pkg | egrep 'vars.sh$' ) | ||
| break | ||
| fi | ||
| done | ||
| if [ -z $mklvars ]; then | ||
| echo 'Failed to find *vars.sh in any pkg named *mkl*' | ||
| exit 1 | ||
| fi | ||
| source $mklvars intel64 | ||
| git clone https://github.com/phonopy/phonopy | ||
| cd phonopy | ||
| python3 -m pip install -e . | ||
| cd .. | ||
| git clone https://github.com/phonopy/phono3py | ||
| cd phono3py | ||
| python3 -m pip install -e . | ||
| cd .. | ||
| - name: Install Quippy from PyPI | ||
| run: python3 -m pip install quippy-ase | ||
| - name: Install wfl (expyre and universalSOAP are dependencies) | ||
| run: python3 -m pip install . | ||
| - name: Install pandoc | ||
| run: sudo apt-get install pandoc | ||
| - name: Build documentation | ||
| run: | | ||
| python3 -m pip install sphinx sphinx-book-theme docutils==0.16 sphinx-click myst-parser | ||
| python3 -m pip install --upgrade jinja2 | ||
| cd docs | ||
| make html | ||
| deploy-docs: | ||
| name: Publish documentation | ||
| if: startsWith(github.ref, "refs/tags/") | ||
|
Check failure on line 108 in .github/workflows/docs.yml
|
||
| needs: build-docs | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Deploy documentation | ||
| uses: peaceiris/actions-gh-pages@v3 | ||
| with: | ||
| github_token: ${{ secrets.GITHUB_TOKEN }} | ||
| publish_dir: docs/build/html | ||
