Skip to content

Issues: lenaschimmel/sc2rf

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

21 Open 11 Closed
21 Open 11 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Bug/question with --force-all-parents --clades all
#35 opened Dec 1, 2022 by MarieLataretu
3
Bridging the gap between sc2rf result and Pangolin X* lineages
#34 opened Jul 14, 2022 by bioinforME
How to interpret BA.4/BA.5 list of mutations
#32 opened May 25, 2022 by jpflorido
GISAID XT recombinant not detected by sc2rf
#31 opened May 16, 2022 by BenjaminDelisle
4
Option to ignore shared substitutions
#30 opened May 6, 2022 by ktmeaton
Terminal Ns not recognized as missing
#29 opened May 6, 2022 by ktmeaton
1
ENH: Sort by breakpoint
#26 opened Apr 3, 2022 by corneliusroemer
ENH: Accept MAPLE file as alternative to fasta
#24 opened Apr 1, 2022 by corneliusroemer
ENH: Output full internal representation of analysis result for sharing without need for recomputation
#22 opened Mar 31, 2022 by corneliusroemer
2
Have a look at the Δm, n, 2 statistic for breakpoint detection
#21 opened Mar 26, 2022 by lenaschimmel
Add relevant primer bed files and make sure the bed format is correctly interpreted
#20 opened Mar 26, 2022 by lenaschimmel
ENH: repeat gene legend every say 30 samples in case of long list
#18 opened Mar 24, 2022 by corneliusroemer
2
ENH: add spaces between genes rather than every 5 mutations
#17 opened Mar 24, 2022 by corneliusroemer
1
ENH: Differentiate between clade defining mutations and optional mutations
#15 opened Mar 23, 2022 by corneliusroemer
3
ENH: Allow tool to run in a web browser
#13 opened Mar 22, 2022 by corneliusroemer
4
Allow more file formats and/or access methods, i.e. Auspice v2 dataset JSON from nextstrain URLs
#12 opened Mar 22, 2022 by lenaschimmel
Write documentation on how to interpret the output
#11 opened Mar 22, 2022 by lenaschimmel
Fix or remove 21I and 21J
#10 opened Mar 22, 2022 by lenaschimmel
11
Deltacrons with NSP3 breakpoint
#8 opened Mar 17, 2022 by ktmeaton
17
Release a version
#5 opened Mar 15, 2022 by erinyoung
5
Issues with VT / ANSI color codes, especially on Windows/Ubuntu
#2 opened Mar 14, 2022 by lenaschimmel
5 of 8 tasks
1
ProTip! Updated in the last three days: updated:>2024-12-01.