Glyma.yuan zhao 2007

Glycine/max/studies/glyma.Yuan_Zhao_2007.yml

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+---
+scientific_name: Glycine max
+gene_symbols:
+  - GmMIPS1
+gene_symbol_long: d-myo-inositol 3-phosphate synthase gene 1
+gene_model_pub_name: DQ323904
+gene_model_full_id: glyma.Wm82.gnm4.ann1.Glyma.11G238800.1
+confidence: 5
+curators:
+  - Raegan Nelson
+comments:
+  - Gm-lpa-TW-1 lpa (low phytic acid) mutation resulted from a 2 bp deletion in MIPS1
+  - Gm-lpa-TW-1 had a significant increase in inorganic phosphorus levels and a decrease in organic phosphorus levels compared to the WT
+  - Gm-lpa-TW-1 can negatively affect seed emergence when seeds are produced in unfavorable enviorments (spring season)
+phenotype_synopsis: involved in the early stages of phytic acid synthesis
+traits:
+  - entity_name: myo-inositol hexakisphosphate metabolic process
+    entity: GO:0033517
+  - entity_name: phosphorus content
+    entity: TO:0001024
+  - entity_name: seed germination stage
+    entity: PO:0007057
+references:
+  - citation: Yuan, Zhao et al., 2007
+    doi: 10.1007/s00122-007-0621-2
+    pmid: 17701395
+  - citation: DeMers, Raboy et al., 2021
+    doi: 10.3389/fpls.2021.708286
+    pmid: 34531883
+---
+scientific_name: Glycine max
+gene_symbols:
+  - GmIPK1
+gene_symbol_long: inositol 1,3,4,5,6 pentakisphosphate 2-kinase 1
+gene_model_pub_name: Glyma14g07880
+gene_model_full_id: glyma.Wm82.gnm1.ann1.Glyma14g07880
+confidence: 5
+curators:
+  - Raegan Nelson
+comments:
+  - Gm-lpa-ZC-2 has a G to A point mutation on the 5th exon of IPK1
+  - the lpa mutation in Gm-lpa-ZC-2 does not affect seed emergence rate or seed yield
+  - Gm-lpa-ZC-2 had a increase in inorganic phosphorus levels and a decrease in organic phosphorus levels compared to the WT
+  - The point mutation affected the pre-mRNA splicing and resulted in the exclusion of the fifth exon of IPK1. This disrupted the kinase and led to low phytic acid levels in Gm-lpa-ZC-2
+phenotype_synopsis: Involved in the conversion of InP5 into phytic acid
+traits:
+  - entity_name: inositol-1,3,4,5,6-pentakisphosphate 2-kinase activity
+    entity: GO:0035299
+  - entity_name: phosphorus content
+    entity: TO:0001024
+references:
+  - citation: Yuan, Zhao et al., 2007
+    doi: 10.1007/s00122-007-0621-2
+    pmid: 17701395
+  - citation: Yuan, Zhu et al., 2012
+    doi: 10.1007/s00122-012-1922-7
+    pmid: 22733447