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Revisions to glyma.Song_Li_2013.yml on 2 July 2024 #47

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Revisions to glyma.Song_Li_2013.yml on 2 July 2024 #47

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17 changes: 10 additions & 7 deletions Glycine/max/studies/glyma.Song_Li_2013.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -3,15 +3,18 @@ scientific_name: Glycine max
gene_symbols:
- GmbZIP123
gene_symbol_long: Basic Leucine Zipper 123
gene_model_pub_name: Glyma06g01240
gene_model_full_id: glyma.Wm82.gnm1.ann1.Glyma06g01240
gene_model_pub_name: Glyma06G01240
gene_model_full_id: glyma.Wm82.gnm1.ann1.Glyma06G01240
confidence: 3
curators:
- Marlene Dorneich-Hayes
- Scott Kalberer
comments:
- The effect of bZIP123 was studied in transgenic Arabidopsis, not soy.
- Overexpression of bZIP123 increases lipid content in transgenic Arabidopsis as well as upregulating the genes that bZIP123 acts on.
phenotype_synopsis: bZIP123 is a transcription factor which promotes expression of sucrose transporter and cell wall invertase genes.
- The effect of GmbZIP123 was studied in transgenic Arabidopsis thaliana rather than in Glycine max.
- Overexpression of bZIP123 increased lipid content in seeds of transgenic Arabidopsis.
- The transcription factor bZIP123 bound to the promoters and upregulated Arabidopis genes for two sucrose transporters (SUC1 and SUC5) and three cell-wall invertases (cwINV1, cwINV3, and cwINV6).
- Cell-wall invertase activity and sugar translocation were consequently boosted in Arabidopsis siliques. The result was greater levels of the sugars glucose, fructose, and sucrose within seeds.
phenotype_synopsis: GmbZIP123 is a transcription factor which promotes expression of sucrose transporter and cell-wall invertase genes. Regulation of lipid accumulation in soybean seeds may be mediated by controlling transport of sugar into seeds from photoautotrophic tissues.
traits:
- entity_name: lipid metabolic process
entity: GO:0006629
Expand All @@ -22,9 +25,9 @@ traits:
- entity_name: seed development
entity: GO:0048316
references:
- citation: Song, Li et. al., 2013
- citation: Song, Li et al., 2013
doi: 10.1093/jxb/ert238
pmid: 23963672
- citation: Zuo, Ikram et. al., 2022
- citation: Zuo, Ikram et al., 2022
doi: 10.1016/j.csbj.2022.06.014
pmid: 35782726
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