Skip to content

Commit

Permalink
Rename glyma.Zhang_Sun_2017.yml to glyma.Zhang_Sun_2018.yml and alter…
Browse files Browse the repository at this point in the history
… the contents of this gene function file
  • Loading branch information
ScottKalberer committed Dec 20, 2024
1 parent a90e4a7 commit f383472
Show file tree
Hide file tree
Showing 2 changed files with 33 additions and 32 deletions.
32 changes: 0 additions & 32 deletions Glycine/max/studies/glyma.Zhang_Sun_2017.yml

This file was deleted.

33 changes: 33 additions & 0 deletions Glycine/max/studies/glyma.Zhang_Sun_2018.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,33 @@
---
scientific_name: Glycine max
gene_symbols:
- GmB1
gene_symbol_long: Bloom 1
gene_model_pub_name: Glyma.13G241700
gene_model_full_id: glyma.Wm82.gnm4.ann1.Glyma.13G241700
confidence: 4
curators:
- Marlene Dorneich-Hayes
- Scott Kalberer
comments:
- Seed coat bloom, which contains allergenic hydrophobic proteins, is synthesized within the endocarp of seed pods and then adheres to the surface of the seed coat.
- Expression of B1 in transgenic soybean plants negatively correlates with the accumulation of oil and positively correlates with the amount of bloom. Overexpression of B1 downregulates fatty acid biosynthesis in seed pods and increases deposition of bloom on the seed coat.
- During soybean domestication selection for the recessive mutant allele (Gmb1) gave rise to both the shiny no-bloom seed coat phenotype and elevated seed oil content. A single nucleotide point mutation from C to T in the coding sequence of Glyma.13G241700 caused an amino acid change from cysteine to arginine. The recessive b1 allele was expressed at significantly lower levels than the dominant B1 allele in developing pods.
phenotype_synopsis:
- Bloom 1 (GmB1) encodes a transmembrane transporter-like protein that not only controls seed coat bloom but also exerts pleiotropic effects on seed oil content following up-regulated oil biosynthesis in pods.
traite:
- entity_name: regulation of seed growth
entity: GO:0080113
- entity_name: seed development
entity: GO:0048316
- entity_name: fat and essential oil content
entity: TO:0000604
- entity_name: seed coat luster
entity: TO:0000888
references:
- citation: Zhang, Sun et al., 2018
doi: 10.1038/s41477-017-0084-7
pmid: 29292374
- citation: Zuo, Ikram et al., 2022
doi: 10.1016/j.csbj.2022.06.014
pmid: 35782726

0 comments on commit f383472

Please sign in to comment.