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Update glyma.Yuan_Zhao_2007.yml
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rnelson-3 authored Jan 7, 2025
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30 changes: 28 additions & 2 deletions Glycine/max/studies/glyma.Yuan_Zhao_2007.yml
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---
scientific_name: Glycine max
classical locus: lpa
gene_symbols:
- GmMIPS1
gene_symbol_long: d-myo-inositol 3-phosphate synthase gene 1
gene_model_pub_name:

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gene_model_full_id: glyma.Wm82.gnm5.ann1.Gm_Wm82_24847
gene_model_full_id:
confidence:
curators:
- Raegan Nelson
comments:
- Gm-lpa-TW-1 lpa (low phytic acid) mutation resulted from a 2 bp deletion in MIPS1
-
- Gm-lpa-TW-1 had a significant increase in inorganic phosphorus levels and a decrease in organic phosphorus levels compared to the WT
phenotype_synopsis: involved in the early stages of phytic acid synthesis
traits:
- entity_name: myo-inositol hexakisphosphate metabolic process
entity: GO:0033517
- entity_name: phosphorus content
entity: TO:0001024
references:
- citation: Yuan, Zhao et al., 2007
doi: 10.1007/s00122-007-0621-2
pmid: 17701395
---
scientific_name: Glycine max
classical locus: lpa
gene_symbols:
- GmPalm1-2
gene_symbol_long: palmitate content gene 1-2
gene_model_pub_name:

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gene_model_full_id:
confidence: 2
curators:
- Raegan Nelson
comments:
- the mutation in Gm-lpa-ZC-2 on LG B2 closely linked with Satt168 and Satt 416 which puts it in the area of the palmitate QTL
- the lpa mutation in Gm-lpa-ZC-2 does not affect seed emergence rate or seed yield
- Gm-lpa-ZC-2 had a increase in inorganic phosphorus levels and a decrease in organic phosphorus levels compared to the WT
phenotype_synopsis: involved in the palmitate content in soybeans
traits:
- entity_name: phosphorus content
entity: TO:0001024
references:
- citation: Yuan, Zhao et al., 2007
doi: 10.1007/s00122-007-0621-2
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