Alterations to glyma.Zhuang_Xue_2021.yml on 17 December 2024

Glycine/max/studies/glyma.Zhuang_Xue_2021.yml

@@ -3,17 +3,23 @@ scientific_name: Glycine max
 gene_symbols:
   - GmSPX5
 gene_symbol_long: SYG1/Pho81/Xpr1 5
-gene_model_pub_name: Glyma10g40820
-gene_model_full_id: glyma.Wm82.gnm1.ann1.Glyma10g40820
+gene_model_pub_name: Glyma10G40820
+gene_model_full_id: glyma.Wm82.gnm4.ann1.Glyma.10G261900
 confidence: 5
 curators:
   - Marlene Dorneich-Hayes
+  - Scott Kalberer
 comments:
-  - SPX5 is most strongly expressed in nodules.
-  - Phosphate deficiency promotes expression of SPX5 in nodules but decreases SPX5 expression in roots. Nitrogen deficiency decreased SPX5 expression in roots.
-  - SPX5 is upregulated by arbuscular mycorrhizal fungal infection in phosphate-deficient conditions.
-  - SPX5 promotes binding of NF-YC4 to the promoter of ASL6, increasing expression of ASL6 during nodule development.
-phenotype_synopsis: SPX5 upregulates ASL genes to positively regulate nodule number. Unlike other SPX genes, SPX5 does not affect expression of PHR genes.
+  - GmSPX5 is most strongly expressed in root nodules.
+  - Phosphate deficiency promotes expression of SPX5 in nodules but decreases
+    SPX5 expression in roots. Nitrogen deficiency decreased SPX5 expression in
+    roots.
+  - SPX5 is upregulated by arbuscular mycorrhizal fungal infection in
+    phosphate-deficient conditions.
+  - SPX5 promotes binding of GmNF-YC4 to the promoter of GmASL6, increasing
+    expression of ASL6 during nodule development.
+phenotype_synopsis: GmSPX5 upregulates GmASL genes to positively regulate nodule
+  number. Unlike other SPX genes, SPX5 does not affect expression of PHR genes.
 traits:
   - entity_name: regulation of biological process involved in symbiotic interaction
     entity: GO:0043903
@@ -22,29 +28,32 @@ traits:
   - relation_name: positively regulates
     relation: RO:0002213
 references:
-  - citation: Zhuang, Xue et. al., 2021
+  - citation: Zhuang, Xue et al., 2021
     doi: 10.1111/tpj.15520
     pmid: 34587329
-  - citation: Yao, Tian et. al., 2014
+  - citation: Yao, Tian et al., 2014
     doi: 10.1093/aob/mcu147
     pmid: 25074550
-  - citation: Yang, Lan et. al., 2022
+  - citation: Yang, Lan et al., 2022
     doi: 10.1111/jipb.13207
     pmid: 34962095
 ---
 scientific_name: Glycine max
 gene_symbols:
   - GmNF-YC4
-gene_symbol_long: Nuclear Factor Y subunit C4
-gene_model_pub_name: Glyma06g17780
-gene_model_full_id: glyma.Wm82.gnm1.ann1.Glyma06g17780
+gene_symbol_long: Nuclear Factor Y Subunit C4
+gene_model_pub_name: Glyma06G17780
+gene_model_full_id: glyma.Wm82.gnm4.ann1.Glyma.06G169600
 confidence: 4
 curators:
   - Marlene Dorneich-Hayes
+  - Scott Kalberer
 comments:
-  - NF-YC4 positively regulates nodule number and nitrogenase activity.
-  - SPX5 promotes binding of NF-YC4 to the promoter of ASL6, increasing expression of ASL6 during nodule development.
-phenotype_synopsis: NF-YC4 is a transcription factor which upregulates ASL genes to positively regulate nodule number.
+  - GmNF-YC4 positively regulates nodule number and nitrogenase activity.
+  - GmSPX5 promotes binding of NF-YC4 to the promoter of GmASL6, increasing
+    expression of ASL6 during nodule development.
+phenotype_synopsis: GmNF-YC4 is a transcription factor which upregulates GmASL
+  genes to positively regulate nodule number.
 traits:
   - entity_name: DNA-binding transcription factor activity
     entity: GO:0003700
@@ -55,9 +64,9 @@ traits:
   - relation_name: positively regulates
     relation: RO:0002213
 references:
-  - citation: Zhuang, Xue et. al., 2021
+  - citation: Zhuang, Xue et al., 2021
     doi: 10.1111/tpj.15520
     pmid: 34587329
-  - citation: Yang, Lan et. al., 2022
+  - citation: Yang, Lan et al., 2022
     doi: 10.1111/jipb.13207
     pmid: 34962095