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Lu_Cheng_2020.yml Updates 15 December 2023
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ScottKalberer committed Dec 15, 2023
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Showing 1 changed file with 16 additions and 11 deletions.
27 changes: 16 additions & 11 deletions Glycine/max/wip_marlene/Lu_Cheng_2020.yml
Original file line number Diff line number Diff line change
Expand Up @@ -7,6 +7,7 @@ gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.01G009600
confidence: 4
curators:
- Marlene Dorneich-Hayes
- Scott Kalberer
comments:
- PHR1 is expressed throughout nodules and expression increases as nodules develop.
- Transgenic overexpression increased nodule size and increased the concentration of N and P.
Expand All @@ -20,16 +21,16 @@ traits:
- entity_name: nodulation
entity: GO:0009877
references:
- citation: Lu, Cheng et. al., 2020
- citation: Lu, Cheng et al., 2020
doi: 10.1104/pp.19.01209
pmid: 32680974
- citation: Isidra-Arellano, Pozas-Rodríguez et. al., 2020
- citation: Isidra-Arellano, Pozas-Rodríguez et al., 2020
doi: 10.1111/tpj.14789
pmid: 32344464
- citation: Wang, Yang et. al., 2020
- citation: Wang, Yang et al., 2020
doi: 10.3389/fpls.2020.00450
pmid: 32499790
- citation: Yang, Lan et. al., 2022
- citation: Yang, Lan et al., 2022
doi: 10.1111/jipb.13207
pmid: 34962095
---
Expand All @@ -41,6 +42,7 @@ gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.02G108500
confidence: 4
curators:
- Marlene Dorneich-Hayes
- Scott Kalberer
comments:
- PHR4 is expressed in noninfected nodule tissues. Transgenic overexpression increased nodule size but decreased nodule number.
- PHR4 targets PHT1-1, PHT1-4, and PHT1-11.
Expand All @@ -54,7 +56,7 @@ traits:
- entity_name: nodulation
entity: GO:0009877
references:
- citation: Lu, Cheng et. al., 2020
- citation: Lu, Cheng et al., 2020
doi: 10.1104/pp.19.01209
pmid: 32680974
---
Expand All @@ -66,6 +68,7 @@ gene_model_full_id: glyma.Wm82.gnm1.ann1.Glyma10g33030
confidence: 3
curators:
- Marlene Dorneich-Hayes
- Scott Kalberer
comments:
- Expression is enhanced by PHR1 in N2-fixing regions.
- Expression is enhanced in non N2-fixing regions by both PHR1 and PHR4.
Expand All @@ -79,10 +82,10 @@ traits:
- entity_name: nodulation
entity: GO:0009877
references:
- citation: Lu, Cheng et. al., 2020
- citation: Lu, Cheng et al., 2020
doi: 10.1104/pp.19.01209
pmid: 32680974
- citation: Yang, Lan et. al., 2022
- citation: Yang, Lan et al., 2022
doi: 10.1111/jipb.13207
pmid: 34962095
---
Expand All @@ -94,6 +97,7 @@ gene_model_full_id: glyma.Wm82.gnm4.ann1.Glyma.10G036800
confidence: 3
curators:
- Marlene Dorneich-Hayes
- Scott Kalberer
comments:
- PHR1 and PHR4 enhance expression of PHT1-4 in non N2-fixing regions.
- When Pi concentration is low, PHR4 enhances PHT1-4 expression.
Expand All @@ -108,10 +112,10 @@ traits:
- entity_name: nodulation
entity: GO:0009877
references:
- citation: Lu, Cheng et. al., 2020
- citation: Lu, Cheng et al., 2020
doi: 10.1104/pp.19.01209
pmid: 32680974
- citation: Yang, Lan et. al., 2022
- citation: Yang, Lan et al., 2022
doi: 10.1111/jipb.13207
pmid: 34962095
---
Expand All @@ -123,6 +127,7 @@ gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.14G188000
confidence: 4
curators:
- Marlene Dorneich-Hayes
- Scott Kalberer
comments:
- PHT1-11 is expressed in noninfected nodule tissues.
- RNAi silencing of PHT1-11 increased nodule number but decreased nodule size and nitrogenase activity.
Expand All @@ -139,9 +144,9 @@ traits:
- entity_name: nodulation
entity: GO:0009877
references:
- citation: Lu, Cheng et. al., 2020
- citation: Lu, Cheng et al., 2020
doi: 10.1104/pp.19.01209
pmid: 32680974
- citation: Yang, Lan et. al., 2022
- citation: Yang, Lan et al., 2022
doi: 10.1111/jipb.13207
pmid: 34962095

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