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Cai_Wang_2017 Updated and Ready for Review (#26)
* Corrected the formats of gene_model_pub_name and gene_model_full_id (single gene name for each of these fields) * Create phavu_Davila-Delgado_Flores-Canul_2023 SYMRK gene in Phaseolus vulgaris * Create vigra_Liu_Zhang_2022 This is a Vigna radiata gene which was studied in transgenic Arabidopsis. Many of its suspected functions have not been experimentally validated. * Commit for its own sake * November 17 2023 Cai_Wang_2017.yml * November 22 2023 Cai_Wang_2017.yml --------- Co-authored-by: StevenCannon-USDA <[email protected]> Co-authored-by: MarleneDH <[email protected]>
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,27 @@ | ||
| gene_symbols: | ||
| - SYMRK (in Phaseolus vulgaris, Lotus japonicus, and Arachis hypogaea) | ||
| - DMI2 (in Medicago truncatula) | ||
| - NORK (in Medicago sativa) | ||
| gene_symbol_long: SYMbiosis Receptor-like Kinase | ||
| gene_model_pub_name: Phvul.002G143400 | ||
| gene_model_full_id: phavu.G19833.gnm1.ann1.Phvul.002G143400 | ||
| confidence: 5 | ||
| curators: | ||
| - Marlene Dorneich-Hayes | ||
| comments: | ||
| - SYMRK is activated in root hairs by phosphorylation in response to the perception of NOD factors | ||
| - SYMRK-EGFP (enhanced green fluorescence protein) is endocytosed from the plasma membrane to intracellular puncta and affects the SYMRK signaling pathway | ||
| - SYMRK-suppressed mutants can't form infection threads and therefore can't form functional nodules, though they do form pseudo-nodules lacking symbiotic bacteria and fungi | ||
| - SYMRK overexpressing mutants form non-functional nodules without rhizobia | ||
| phenotype_synopsis: SYMRK is necessary for nodule organogenesis. | ||
| traits: | ||
| - entity_name: bioloical process involved in symbiotic interaction | ||
| entity: GO:0044403 | ||
| - entity_name: kinase activity | ||
| entity: GO:0016301 | ||
| - entity_name: positive regulation of receptor-mediated endocytosis | ||
| entity: GO:0048260 | ||
| references: | ||
| - citation: Dávila-Delgado, Flores-Canúl, et al., 2023 | ||
| doi: 10.1007/s00425-023-04116-0 | ||
| pmid: 36928335 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,23 @@ | ||
| gene_symbols: | ||
| - CCA1L26 | ||
| gene_symbol_long: Circadian Clock Assoicated 1 Like 26 | ||
| gene_model_pub_name: Vradi05g00310 | ||
| gene_model_full_id: vigra.VC1973A.gnm6.ann1.Vradi05g00310 | ||
| confidence: 3 | ||
| curators: | ||
| - Marlene Dorneich-Hayes | ||
| comments: | ||
| - VrCCA1L26 shares homology with AtCCA1, AtLHY, and GmLCL genes. | ||
| - In transgenic Arabidopsis, VrCCA1L26 delays flowering time by supressing Constans (CO), Flowering locus T (FT), Supressor of Overexpression of Constans 1 (SOC1), and Timing of Cab Expression 1 (TOC1). | ||
| - VrCCA1L26 expression is affected by photoperiod and is supressed by expression of TOC1. | ||
| - VrCCA1L26 may play a role in isoflavonoid synthesis, stress response, hypocotyl growth, seed germination, and leaf senescence. This has not been experimentally validated. | ||
| phenotype_synopsis: VrCCA1L26 delays flowering time in transgenic Arabidopsis thaliana, but its function in Vigna radiata has not been experimentally validated. | ||
| traits: | ||
| - entity_name: transcription factor binding | ||
| entity: GO:0008134 | ||
| - entity_name: photoperiod-sensitive flowering time trait | ||
| entity: TO:0000934 | ||
| references: | ||
| - citation: Liu, Zhang, et. al., 2022 | ||
| doi: 10.1186/s12864-022-08620-7 | ||
| pmid: 35581536 |