partition mrna files for low quality

legumeinfo · Oct 10, 2023 · 729e96c · 729e96c
1 parent 63dc17d
commit 729e96c
Showing 1 changed file with 6 additions and 3 deletions.
diff --git a/Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/CHECKSUM.MG20.gnm3.ann1.WF9B.md5 b/Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/CHECKSUM.MG20.gnm3.ann1.WF9B.md5
@@ -1,12 +1,13 @@
 32b50f4c3f40a03060ffd68d694b11b8  ./lotja.MG20.gnm3.ann1.WF9B.phytozome_10_2.HFNR.gfa.tsv.gz
-1990c263fca8a2dd3e11e237e98e538b  ./lotja.MG20.gnm3.ann1.WF9B.mrna.fna.gz.fai
+c5bc2255302e295b1cb881477292e49b  ./lotja.MG20.gnm3.ann1.WF9B.mrna.fna.gz.fai
 d8414faa697d19526b4f8d561ab2057c  ./lotja.MG20.gnm3.ann1.WF9B.cds.fna.gz
 a94d0a2a457e1a91dd0567ebb5af4aad  ./MANIFEST.MG20.gnm3.ann1.WF9B.descriptions.yml
 178d6d4771232495fb8c6ce4b1380c30  ./lotja.MG20.gnm3.ann1.WF9B.legfed_v1_0.M65K.gfa.tsv.gz
 6abb20bed1d11f3c32e389ffe3009f70  ./BUSCO/lotja.MG20.gnm3.ann1.WF9B.busco.fabales_odb10.short_summary.json
 af48a6a3067676e64bbe5feccc8bf82c  ./BUSCO/lotja.MG20.gnm3.ann1.WF9B.busco.fabales_odb10.full_table.tsv.gz
 94540a0f478549c95d66116f2fd22e20  ./BUSCO/lotja.MG20.gnm3.ann1.WF9B.busco.fabales_odb10.short_summary.txt
 be4d39d7d00827e593086c42670f774b  ./lotja.MG20.gnm3.ann1.WF9B.gene_models_main.gff3.gz.tbi
+d8371d190f4a02434bfa5c70811bce07  ./lotja.MG20.gnm3.ann1.WF9B.low_quality_transcript.fna.gz
 29c2a503c3f5ecf5d0319474be638faf  ./lotja.MG20.gnm3.ann1.WF9B.iprscan.gff3.gz
 0f4b8875dc5eac37ab04067d9ac353bd  ./lotja.MG20.gnm3.ann1.WF9B.cds.fna.gz.fai
 bae609ed62c4a2430a23c6b39fe98a78  ./lotja.MG20.gnm3.ann1.WF9B.protein_primary.faa.gz.gzi
@@ -18,7 +19,9 @@ aa47dea5dee7778458ad1cc83c2b652f  ./lotja.MG20.gnm3.ann1.WF9B.low_quality_genes.
 bd8912360530a39594ca0b90d4518739  ./lotja.MG20.gnm3.ann1.WF9B.mrna_primary.fna.gz.gzi
 d29e6d07b271ca7fcab508fd40ccfb92  ./lotja.MG20.gnm3.ann1.WF9B.protein.faa.gz.gzi
 7805202b1ce34186b7d836ce8cd0c293  ./CHANGES.MG20.gnm3.ann1.WF9B.txt
+59ee78058292cba9dfdd256d0a9e8199  ./lotja.MG20.gnm3.ann1.WF9B.low_quality_transcript.fna.gz.gzi
 a479089148a37e1f12cb821ca226ed27  ./README.MG20.gnm3.ann1.WF9B.yml
+bd2eac01e3a575e751d1bc5097ab270f  ./lotja.MG20.gnm3.ann1.WF9B.low_quality_transcript.fna.gz.fai
 69b9679a0c98087c7feffaf25e39c05c  ./lotja.MG20.gnm3.ann1.WF9B.gene_models_main.gff3.gz
 14494f897352153ccf78b0d58098f028  ./lotja.MG20.gnm3.ann1.WF9B.mrna_primary.fna.gz.fai
 10d099ed82e17814e42d59639d23bca5  ./lotja.MG20.gnm3.ann1.WF9B.protein.faa.gz.fai
@@ -30,9 +33,9 @@ edcd471f6581812b06a2689de9765d0c  ./lotja.MG20.gnm3.ann1.WF9B.protein.faa.gz
 c19427187eff0d55d6b3cf107343e356  ./lotja.MG20.gnm3.ann1.WF9B.cds_primary.fna.gz
 111a042d11c407346ea7a0565ea04ce0  ./lotja.MG20.gnm3.ann1.WF9B.low_quality_genes.gff3.gz.tbi
 a89c30ad3c5bb3053d73ffcebfd4dd5c  ./lotja.MG20.gnm3.ann1.WF9B.cds.bed.gz
-39d773fcbe553bbd9d27b37d25cc7956  ./lotja.MG20.gnm3.ann1.WF9B.mrna.fna.gz
+4f0eab280c3d45280a0e3f4568a3a3d9  ./lotja.MG20.gnm3.ann1.WF9B.mrna.fna.gz
 701e5248fb4d2e5ba1ed96e240097d92  ./lotja.MG20.gnm3.ann1.WF9B.mrna_primary.fna.gz
 90af351bb871b8015cc6d2b93ba34082  ./busco/lotja.MG20.gnm3.ann1.WF9B.protein_primaryTranscript.faa.gz_busco/short_summary.specific.embryophyta_odb10.lotja.MG20.gnm3.ann1.WF9B.protein_primaryTranscript.faa.gz_busco.txt
 8b9080a966db35006b229c98419df296  ./busco/lotja.MG20.gnm3.ann1.WF9B.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.lotja.MG20.gnm3.ann1.WF9B.protein.faa.gz_busco.txt
-121aa11ce7e9c105da1d740412a43105  ./lotja.MG20.gnm3.ann1.WF9B.mrna.fna.gz.gzi
+8932bdd1a21c4e766eda349f68d59f43  ./lotja.MG20.gnm3.ann1.WF9B.mrna.fna.gz.gzi
 4e67c29201e0785618471f9b8bf5ee23  ./lotja.MG20.gnm3.ann1.WF9B.cds.bed.gz.tbi