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31 changes: 31 additions & 0 deletions
31
...ynomene/evenia/annotations/CIAT22838.gnm1.ann1.ZM3R/MANIFEST.CIAT22838.gnm1.ann1.ZM3R.yml
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,31 @@ | ||
| --- | ||
| - name: aesev.CIAT22838.gnm1.ann1.ZM3R.cds_primary.fna.gz | ||
| description: CDS sequences - primary only | ||
| - name: aesev.CIAT22838.gnm1.ann1.ZM3R.cds.fna.gz | ||
| description: CDS sequences | ||
| applications: | ||
| - blast | ||
| - mines | ||
| - name: aesev.CIAT22838.gnm1.ann1.ZM3R.gene_models_main.bed.gz | ||
| description: BED-format file, derived from gene_models_main.gff3 | ||
| - name: aesev.CIAT22838.gnm1.ann1.ZM3R.gene_models_main.gff3.gz | ||
| description: Gene models - main | ||
| applications: | ||
| - mines | ||
| - name: aesev.CIAT22838.gnm1.ann1.ZM3R.iprscan.gff3.gz | ||
| description: InterPro functional information for genes (gff format) | ||
| - name: aesev.CIAT22838.gnm1.ann1.ZM3R.legfed_v1_0.M65K.gfa.tsv.gz | ||
| description: gene family assignments | ||
| - name: aesev.CIAT22838.gnm1.ann1.ZM3R.mrna_primary.fna.gz | ||
| description: Transcript sequences - primary only | ||
| - name: aesev.CIAT22838.gnm1.ann1.ZM3R.mrna.fna.gz | ||
| description: mrna.fna.gz | ||
| applications: | ||
| - mines | ||
| - name: aesev.CIAT22838.gnm1.ann1.ZM3R.protein_primary.faa.gz | ||
| description: Protein sequences - primary only | ||
| - name: aesev.CIAT22838.gnm1.ann1.ZM3R.protein.faa.gz | ||
| description: Protein sequences | ||
| applications: | ||
| - blast | ||
| - mines |
8 changes: 8 additions & 0 deletions
8
Aeschynomene/evenia/genomes/CIAT22838.gnm1.XF73/MANIFEST.CIAT22838.gnm1.XF73.yml
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,8 @@ | ||
| --- | ||
| - name: aesev.CIAT22838.gnm1.XF73.gcv_genome.gff3.gz | ||
| description: gff of assembly molecule sizes | ||
| - name: aesev.CIAT22838.gnm1.XF73.genome_main.fna.gz | ||
| description: Primary genome assembly | ||
| applications: | ||
| - blast | ||
| - mines |
18 changes: 18 additions & 0 deletions
18
Arachis/cardenasii/genomes/K10017.gnm1.DQ4M/MANIFEST.K10017.gnm1.DQ4M.yml
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,18 @@ | ||
| --- | ||
| - name: araca.K10017.gnm1.DQ4M.genome_main.fna.gz | ||
| description: Primary genome assembly | ||
| applications: | ||
| - blast | ||
| - mines | ||
| - name: araca.K10017.gnm1.DQ4M.pchr_by_scaff.tar.gz | ||
| description: Pseudomolecules in separate files, composed of separate scaffolds, plus remaining unanchored scaffolds | ||
| prior_names: | ||
| - derived from Acardenasii.v14167.SALSA.fasta | ||
| - name: araca.K10017.gnm1.DQ4M.pchr.agp.txt.gz | ||
| description: Golden path file, for GenBank submission | ||
| prior_names: | ||
| - derived from Acardenasii.v14167.SALSA.fasta | ||
| - name: araca.K10017.gnm1.DQ4M.scaffolds.fna.gz | ||
| description: Scaffolds, unoriented, used in the main genome assembly | ||
| prior_names: | ||
| - derived from Acardenasii.v14167.SALSA.fasta |
51 changes: 51 additions & 0 deletions
51
Arachis/duranensis/annotations/V14167.gnm1.ann1.cxSM/MANIFEST.V14167.gnm1.ann1.cxSM.yml
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,51 @@ | ||
| --- | ||
| - name: aradu.V14167.gnm1.ann1.cxSM.cds.fna.gz | ||
| description: CDS sequences | ||
| applications: | ||
| - blast | ||
| - mines | ||
| - name: aradu.V14167.gnm1.ann1.cxSM.gene_models_lowqual_or_TE.gff.gz | ||
| description: Gene models, low quality or transposable elements | ||
| prior_names: | ||
| - Aradu.V14167.a1.M1.genemodels.gff.lowqual_or_TE | ||
| - name: aradu.V14167.gnm1.ann1.cxSM.gene_models_main.bed.gz | ||
| description: BED-format file, derived from gene_models_main.gff3 | ||
| - name: aradu.V14167.gnm1.ann1.cxSM.gene_models_main.gff3.gz | ||
| description: Gene models - main | ||
| applications: | ||
| - mines | ||
| - name: aradu.V14167.gnm1.ann1.cxSM.info_AED_scores.txt.gz | ||
| description: MAKER quality scores | ||
| prior_names: | ||
| - Aradu.V14167.a1.M1.AED_scores | ||
| - name: aradu.V14167.gnm1.ann1.cxSM.info_annot_AHRD_full.txt.gz | ||
| description: annotation from the AHRD pipeline | ||
| prior_names: | ||
| - Aradu.V14167.a1.M1.AHRD.csv | ||
| - name: aradu.V14167.gnm1.ann1.cxSM.info_annot_AHRD_slim.txt.gz | ||
| description: annotation from the AHRD pipeline - simplified | ||
| prior_names: | ||
| - Aradu.V14167.a1.M1.AHRD.slim | ||
| - name: aradu.V14167.gnm1.ann1.cxSM.legfed_v1_0.M65K.gfa.tsv.gz | ||
| description: gene family assignments | ||
| - name: aradu.V14167.gnm1.ann1.cxSM.mrna_lowqual_or_TE.fna.gz | ||
| description: transcript sequences - low quality or transposable elements | ||
| prior_names: | ||
| - Aradu.V14167.a1.M1.transcript.fa.lowqual_or_TE | ||
| - name: aradu.V14167.gnm1.ann1.cxSM.mrna.fna.gz | ||
| description: mrna.fna.gz | ||
| applications: | ||
| - mines | ||
| prior_names: | ||
| - Aradu.V14167.a1.M1.transcript.fa | ||
| - name: aradu.V14167.gnm1.ann1.cxSM.protein_lowqual_or_TE.faa.gz | ||
| description: protein sequence - low-quality or TE elements | ||
| prior_names: | ||
| - Aradu.V14167.a1.M1.peptide.fa.lowqual_or_TE | ||
| - name: aradu.V14167.gnm1.ann1.cxSM.protein.faa.gz | ||
| description: Protein sequences | ||
| applications: | ||
| - blast | ||
| - mines | ||
| prior_names: | ||
| - Aradu.V14167.a1.M1.peptide.fa |
25 changes: 25 additions & 0 deletions
25
Arachis/duranensis/genomes/K30060.gnm1.W9B1/MANIFEST.K30060.gnm1.W9B1.yml
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,25 @@ | ||
| --- | ||
| - name: aradu.K30060.gnm1.W9B1.genome_main.fna.gz | ||
| description: Primary genome assembly | ||
| applications: | ||
| - blast | ||
| - mines | ||
| prior_names: | ||
| - derived from ADur30060.contigs.v1.1.purged.broken.fa | ||
| - name: aradu.K30060.gnm1.W9B1.pathfile.agp.gz | ||
| description: Golden path file, for GenBank submission | ||
| prior_names: | ||
| - derived from ragtag.scaffolds.v1.1c.agp | ||
| - with subsequent modifications | ||
| - name: aradu.K30060.gnm1.W9B1.pchr_by_scaff.tar.gz | ||
| description: Pseudomolecules in separate files, composed of separate scaffolds, plus remaining unanchored scaffolds | ||
| prior_names: | ||
| - derived from ADur30060.contigs.v1.1.purged.broken.fa | ||
| - name: aradu.K30060.gnm1.W9B1.scaffs_placed.tar.gz | ||
| description: Scaffolds - placed | ||
| prior_names: | ||
| - derived from ADur30060.contigs.v1.1.purged.broken.fa | ||
| - name: aradu.K30060.gnm1.W9B1.scaffs_unplaced.tar.gz | ||
| description: Scaffolds - unplaced | ||
| prior_names: | ||
| - derived from ADur30060.contigs.v1.1.purged.broken.fa |
8 changes: 8 additions & 0 deletions
8
Arachis/duranensis/genomes/K30065.gnm1.M24N/MANIFEST.K30065.gnm1.M24N.yml
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,8 @@ | ||
| --- | ||
| - name: aradu.K30065.gnm1.M24N.agp_unplaced.txt.gz | ||
| description: Golden path file, for GenBank submission | ||
| - name: aradu.K30065.gnm1.M24N.genome_main.fna.gz | ||
| description: Primary genome assembly | ||
| applications: | ||
| - blast | ||
| - mines |
10 changes: 10 additions & 0 deletions
10
Arachis/duranensis/genomes/V14167.gnm1.SWBf/MANIFEST.V14167.gnm1.SWBf.yml
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,10 @@ | ||
| --- | ||
| - name: aradu.V14167.gnm1.SWBf.genome_main.fna.gz | ||
| description: Primary genome assembly | ||
| applications: | ||
| - blast | ||
| - mines | ||
| - name: aradu.V14167.gnm1.SWBf.pchr_by_scaff_RM.tar.gz | ||
| description: Repeat-masked Pseudomolecules in separate files, composed of separate scaffolds, plus remaining unanchored scaffolds | ||
| - name: aradu.V14167.gnm1.SWBf.pchr_by_scaff.tar.gz | ||
| description: Pseudomolecules in separate files, composed of separate scaffolds, plus remaining unanchored scaffolds |
6 changes: 6 additions & 0 deletions
6
Arachis/duranensis/genomes/V14167.gnm2.J7QH/MANIFEST.V14167.gnm2.J7QH.yml
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,6 @@ | ||
| --- | ||
| - name: aradu.V14167.gnm2.J7QH.genome_main.fna.gz | ||
| description: Primary genome assembly | ||
| applications: | ||
| - blast | ||
| - mines |
47 changes: 47 additions & 0 deletions
47
Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/MANIFEST.BaileyII.gnm1.ann1.PQM7.yml
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,47 @@ | ||
| --- | ||
| - name: arahy.BaileyII.gnm1.ann1.PQM7.cds_primary.fna.gz | ||
| description: CDS sequences - primary only | ||
| prior_names: | ||
| - arahy.BaileyII.cds_primary.fna.gz | ||
| - name: arahy.BaileyII.gnm1.ann1.PQM7.cds.fna.gz | ||
| description: CDS sequences | ||
| applications: | ||
| - blast | ||
| - mines | ||
| prior_names: | ||
| - arahy.BaileyII.cds.fna.gz | ||
| - name: arahy.BaileyII.gnm1.ann1.PQM7.featid_map.tsv.gz | ||
| description: Hash file of old/new gene IDs | ||
| - name: arahy.BaileyII.gnm1.ann1.PQM7.gene_models_main.bed.gz | ||
| description: BED-format file, derived from gene_models_main.gff3 | ||
| - name: arahy.BaileyII.gnm1.ann1.PQM7.gene_models_main.gff3.gz | ||
| description: Gene models - main | ||
| applications: | ||
| - mines | ||
| prior_names: | ||
| - arahy.BaileyII.mRNA_ID.gff3.gz | ||
| - name: arahy.BaileyII.gnm1.ann1.PQM7.iprscan.gff3.gz | ||
| description: InterPro functional information for genes (gff format) | ||
| - name: arahy.BaileyII.gnm1.ann1.PQM7.legfed_v1_0.M65K.gfa.tsv.gz | ||
| description: gene family assignments | ||
| - name: arahy.BaileyII.gnm1.ann1.PQM7.mrna_primary.fna.gz | ||
| description: Transcript sequences - primary only | ||
| prior_names: | ||
| - arahy.BaileyII.mrna_primary.fna.gz | ||
| - name: arahy.BaileyII.gnm1.ann1.PQM7.mrna.fna.gz | ||
| description: mrna.fna.gz | ||
| applications: | ||
| - mines | ||
| prior_names: | ||
| - arahy.BaileyII.mrna.fna.gz | ||
| - name: arahy.BaileyII.gnm1.ann1.PQM7.protein_primary.faa.gz | ||
| description: Protein sequences - primary only | ||
| prior_names: | ||
| - arahy.BaileyII.protein_primary.faa.gz | ||
| - name: arahy.BaileyII.gnm1.ann1.PQM7.protein.faa.gz | ||
| description: Protein sequences | ||
| applications: | ||
| - blast | ||
| - mines | ||
| prior_names: | ||
| - arahy.BaileyII.protein.faa.gz |
33 changes: 33 additions & 0 deletions
33
Arachis/hypogaea/annotations/Tifrunner.gnm1.ann1.CCJH/MANIFEST.Tifrunner.gnm1.ann1.CCJH.yml
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,33 @@ | ||
| --- | ||
| - name: arahy.Tifrunner.gnm1.ann1.CCJH.cds_primary.fna.gz | ||
| description: CDS sequences - primary only | ||
| - name: arahy.Tifrunner.gnm1.ann1.CCJH.cds.fna.gz | ||
| description: CDS sequences | ||
| applications: | ||
| - blast | ||
| - mines | ||
| - name: arahy.Tifrunner.gnm1.ann1.CCJH.gene_models_main.bed.gz | ||
| description: BED-format file, derived from gene_models_main.gff3 | ||
| - name: arahy.Tifrunner.gnm1.ann1.CCJH.gene_models_main.gff3.gz | ||
| description: Gene models - main | ||
| applications: | ||
| - mines | ||
| - name: arahy.Tifrunner.gnm1.ann1.CCJH.info_descriptors.txt.gz | ||
| description: MISSING | ||
| - name: arahy.Tifrunner.gnm1.ann1.CCJH.legfed_v1_0.M65K.gfa.tsv.gz | ||
| description: gene family assignments | ||
| - name: arahy.Tifrunner.gnm1.ann1.CCJH.mrna_primary.fna.gz | ||
| description: Transcript sequences - primary only | ||
| - name: arahy.Tifrunner.gnm1.ann1.CCJH.mrna.fna.gz | ||
| description: mrna.fna.gz | ||
| applications: | ||
| - mines | ||
| - name: arahy.Tifrunner.gnm1.ann1.CCJH.protein_primary.faa.gz | ||
| description: Protein sequences - primary only | ||
| - name: arahy.Tifrunner.gnm1.ann1.CCJH.protein.faa.gz | ||
| description: Protein sequences | ||
| applications: | ||
| - blast | ||
| - mines | ||
| - name: arahy.Tifrunner.gnm1.ann1.CCJH.repeats_complex.gff3.gz | ||
| description: MISSING |
49 changes: 49 additions & 0 deletions
49
Arachis/hypogaea/annotations/Tifrunner.gnm2.ann1.4K0L/MANIFEST.Tifrunner.gnm2.ann1.4K0L.yml
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,49 @@ | ||
| --- | ||
| - name: arahy.Tifrunner.gnm2.ann1.4K0L.cds_primary.fna.gz | ||
| description: CDS sequences - primary only | ||
| prior_names: | ||
| - arahy.Tifrunner.gnm1.ann1.CCJH.cds_primaryTranscript.fna | ||
| - name: arahy.Tifrunner.gnm2.ann1.4K0L.cds.fna.gz | ||
| description: CDS sequences | ||
| applications: | ||
| - blast | ||
| - mines | ||
| - name: arahy.Tifrunner.gnm2.ann1.4K0L.gene_models_main.bed.gz | ||
| description: BED-format file, derived from gene_models_main.gff3 | ||
| - name: arahy.Tifrunner.gnm2.ann1.4K0L.gene_models_main.gff3.gz | ||
| description: Gene models - main | ||
| applications: | ||
| - mines | ||
| prior_names: | ||
| - arahy.Tifrunner.gnm1.ann1.CCJH.gene_models_main.gff3 mapped into gnm2 | ||
| - name: arahy.Tifrunner.gnm2.ann1.4K0L.info_descriptors.txt.gz | ||
| description: MISSING | ||
| - name: arahy.Tifrunner.gnm2.ann1.4K0L.info_fwd_chain.txt.gz | ||
| description: MISSING | ||
| - name: arahy.Tifrunner.gnm2.ann1.4K0L.info_unmapped_models.txt.gz | ||
| description: MISSING | ||
| - name: arahy.Tifrunner.gnm2.ann1.4K0L.legfed_v1_0.M65K.gfa.tsv.gz | ||
| description: gene family assignments | ||
| - name: arahy.Tifrunner.gnm2.ann1.4K0L.mrna_primary.fna.gz | ||
| description: Transcript sequences - primary only | ||
| prior_names: | ||
| - arahy.Tifrunner.gnm1.ann1.CCJH.transcript_primaryTranscript.fna | ||
| - name: arahy.Tifrunner.gnm2.ann1.4K0L.mrna.fna.gz | ||
| description: mrna.fna.gz | ||
| applications: | ||
| - mines | ||
| prior_names: | ||
| - arahy.Tifrunner.gnm1.ann1.CCJH.transcript.fna | ||
| - name: arahy.Tifrunner.gnm2.ann1.4K0L.protein_primary.faa.gz | ||
| description: Protein sequences - primary only | ||
| prior_names: | ||
| - arahy.Tifrunner.gnm1.ann1.CCJH.protein_primaryTranscript.faa | ||
| - name: arahy.Tifrunner.gnm2.ann1.4K0L.protein.faa.gz | ||
| description: Protein sequences | ||
| applications: | ||
| - blast | ||
| - mines | ||
| prior_names: | ||
| - arahy.Tifrunner.gnm1.ann1.CCJH.protein.faa | ||
| - name: arahy.Tifrunner.gnm2.ann1.4K0L.snpEffectPredictor.bin.gz | ||
| description: MISSING |
49 changes: 49 additions & 0 deletions
49
Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/MANIFEST.Tifrunner.gnm2.ann2.PVFB.yml
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,49 @@ | ||
| --- | ||
| - name: arahy.Tifrunner.gnm2.ann2.PVFB.cds_lowqual.fna.gz | ||
| description: CDS sequences; low confidence | ||
| prior_names: | ||
| - arahy.Tifrunner.gnm2.ann2.cds_lowqual.fna.gz | ||
| - name: arahy.Tifrunner.gnm2.ann2.PVFB.cds.fna.gz | ||
| description: CDS sequences | ||
| applications: | ||
| - blast | ||
| - mines | ||
| prior_names: | ||
| - arahy.Tifrunner.gnm2.ann2.cds.fna.gz | ||
| - name: arahy.Tifrunner.gnm2.ann2.PVFB.featid_map.tsv.gz | ||
| description: Hash file of old/new gene IDs | ||
| - name: arahy.Tifrunner.gnm2.ann2.PVFB.gene_models_lowqual.gff3.gz | ||
| description: MISSING | ||
| - name: arahy.Tifrunner.gnm2.ann2.PVFB.gene_models_main.bed.gz | ||
| description: BED-format file, derived from gene_models_main.gff3 | ||
| - name: arahy.Tifrunner.gnm2.ann2.PVFB.gene_models_main.gff3.gz | ||
| description: Gene models - main | ||
| applications: | ||
| - mines | ||
| prior_names: | ||
| - arahy.Tifrunner.gnm2.ann2.gene_models_bare.gff3.gz | ||
| - name: arahy.Tifrunner.gnm2.ann2.PVFB.iprscan.gff3.gz | ||
| description: InterPro functional information for genes (gff format) | ||
| - name: arahy.Tifrunner.gnm2.ann2.PVFB.legfed_v1_0.M65K.gfa.tsv.gz | ||
| description: gene family assignments | ||
| - name: arahy.Tifrunner.gnm2.ann2.PVFB.mrna_lowqual.fna.gz | ||
| description: transcript sequences - low quality or transposable elements | ||
| prior_names: | ||
| - arahy.Tifrunner.gnm2.ann2.mrna_lowqual.fna.gz | ||
| - name: arahy.Tifrunner.gnm2.ann2.PVFB.mrna.fna.gz | ||
| description: mrna.fna.gz | ||
| applications: | ||
| - mines | ||
| prior_names: | ||
| - arahy.Tifrunner.gnm2.ann2.mrna.fna.gz | ||
| - name: arahy.Tifrunner.gnm2.ann2.PVFB.protein_lowqual.faa.gz | ||
| description: protein sequence - low-quality or TE elements | ||
| prior_names: | ||
| - arahy.Tifrunner.gnm2.ann2.protein_lowqual.faa.gz | ||
| - name: arahy.Tifrunner.gnm2.ann2.PVFB.protein.faa.gz | ||
| description: Protein sequences | ||
| applications: | ||
| - blast | ||
| - mines | ||
| prior_names: | ||
| - arahy.Tifrunner.gnm2.ann2.protein.faa.gz |
10 changes: 10 additions & 0 deletions
10
Arachis/hypogaea/genomes/BaileyII.gnm1.1JTF/MANIFEST.BaileyII.gnm1.1JTF.yml
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,10 @@ | ||
| --- | ||
| - name: arahy.BaileyII.gnm1.1JTF.genome_main.fna.gz | ||
| description: Primary genome assembly | ||
| applications: | ||
| - blast | ||
| - mines | ||
| prior_names: | ||
| - JAGJTH01_all.fna.gz | ||
| - name: arahy.BaileyII.gnm1.1JTF.seqid_map.tsv.gz | ||
| description: Map (hash) file of old/new chromosome and scaffold IDs |
6 changes: 6 additions & 0 deletions
6
Arachis/hypogaea/genomes/Fuhuasheng.gnm1.XX5Y/MANIFEST.Fuhuasheng.gnm1.XX5Y.yml
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|---|---|---|
| @@ -0,0 +1,6 @@ | ||
| --- | ||
| - name: arahy.Fuhuasheng.gnm1.XX5Y.genome_main.fna.gz | ||
| description: Primary genome assembly | ||
| applications: | ||
| - blast | ||
| - mines |
10 changes: 10 additions & 0 deletions
10
Arachis/hypogaea/genomes/Shitouqi.gnm1.L4VP/MANIFEST.Shitouqi.gnm1.L4VP.yml
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|---|---|---|
| @@ -0,0 +1,10 @@ | ||
| --- | ||
| - name: arahy.Shitouqi.gnm1.L4VP.contigs.fna.gz | ||
| description: Fasta file of contig sequences | ||
| prior_names: | ||
| - HuaSheng.quiver.polish.pcontig.fasta | ||
| - name: arahy.Shitouqi.gnm1.L4VP.genome_main.fna.gz | ||
| description: Primary genome assembly | ||
| applications: | ||
| - blast | ||
| - mines |
18 changes: 18 additions & 0 deletions
18
Arachis/hypogaea/genomes/Tifrunner.gnm1.KYV3/MANIFEST.Tifrunner.gnm1.KYV3.yml
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,18 @@ | ||
| --- | ||
| - name: arahy.Tifrunner.gnm1.KYV3.altHap.fna.gz | ||
| description: Assembly of alternative haplotype | ||
| - name: arahy.Tifrunner.gnm1.KYV3.genome_assignment.txt.gz | ||
| description: SNPs in tetraploid chromosomes and in ancestral genome | ||
| - name: arahy.Tifrunner.gnm1.KYV3.genome_main.fna.gz | ||
| description: Primary genome assembly | ||
| applications: | ||
| - blast | ||
| - mines | ||
| - name: arahy.Tifrunner.gnm1.KYV3.genome_repeatmask_coords.gff.gz | ||
| description: Coordinates of genomic repeats | ||
| - name: arahy.Tifrunner.gnm1.KYV3.genome_softmasked.fna.gz | ||
| description: Softmasked genome assembly | ||
| - name: arahy.Tifrunner.gnm1.KYV3.rDNA.fna.gz | ||
| description: Ribosomal DNA sequence | ||
| - name: arahy.Tifrunner.gnm1.KYV3.repeat.fna.gz | ||
| description: Genomic sequence consisting primarily of repeats |
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