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  1. genesis genesis Public

    A library for working with phylogenetic and population genetic data.

    C++ 57 12

  2. gappa gappa Public

    A toolkit for analyzing and visualizing phylogenetic (placement) data

    C++ 57 7

  3. grenedalf grenedalf Public

    Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments

    C++ 35 2

  4. moiexpositoalonsolab/grenepipe moiexpositoalonsolab/grenepipe Public

    A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles.

    Python 94 21

  5. torognes/swarm torognes/swarm Public

    A robust and fast clustering method for amplicon-based studies

    C++ 127 23

  6. petrov-lab/HAFpipe-line petrov-lab/HAFpipe-line Public

    calculate haplotype-derived allele frequencies for pool-seq samples

    Shell 7 1