Github contains scripts and files used to generate hypergeometric and MAGMA results. Scripts were originally run on HPC environment using a customized bsub job submission script. These scripts were removed for this github for increased portability.
MAGMA reference files can be found here: https://ctg.cncr.nl/software/magma
Reference files can be found here: https://hgdownload.cse.ucsc.edu/goldenpath/