ROMEO in mritools

New releases of ROMEO are bundled into the package mritools:
https://github.com/korbinian90/CompileMRI.jl/releases

ROMEO is called the same way as before and the binary is under mritools/bin/romeo
Compatible with SEPIA (and it is suggested to use the newest mritools version with SEPIA)

v3.2.8

Fix --version
Write version info to settings.txt
The mritools package contains both romeo and clearswi executables

v3.2.7

Fix phase offset write bug
Add flag --write-phase-offset

v3.2.6

No FFTW dependency (This caused relocatability issues in certain cases)

v3.2.5

New Feature: two optional magnitude weights. Can be selected via the --weights option

v3.2.4

New Feature: MCPC-3D-S phase offset correction can be used in bipolar mode to remove even-odd phase gradients
New Feature: The program can perform coil combination prior to unwrapping. The channels have to be in the 5th dimension and MCPC-3D-S has to be selected.
New Feature: qualitymask using the ROMEO quality map with a manual threshold
Change: The input syntax has slightly changed (the phase input is now with -p). However, it should be backwards compatible and still take the phase as first or last argument without the -p specifier.
Change: 4D input requires echo times to avoid wrong configurations.
Improvement: The echo times can be given with spaces like [1, 2, 3] or [1 2 3]
Improvement: Mask files with wrongly set slope in NIfTI header are correctly read in.
Improvement: New error messages with hints on wrong inputs

v3.2.3

New Feature: MCPC-3D-S phase offset correction can be used in bipolar mode to remove even-odd phase gradients
New Feature: The program can perform coil combination prior to unwrapping. The channels have to be in the 5th dimension and MCPC-3D-S has to be selected.
New Feature: qualitymask using the ROMEO quality map with a manual threshold
Change: The input syntax has slightly changed (the phase input is now with -p). However, it should be backwards compatible and still take the phase as first or last argument without the -p specifier.
Change: 4D input requires echo times to avoid wrong configurations.
Improvement: The echo times can be given with spaces like [1, 2, 3] or [1 2 3]
Improvement: Mask files with wrongly set slope in NIfTI header are correctly read in.
Improvement: New error messages with hints on wrong inputs

v3.2.2

New Feature: MCPC-3D-S phase offset correction can be used in bipolar mode to remove even-odd phase gradients
New Feature: The program can perform coil combination prior to unwrapping. The channels have to be in the 5th dimension and MCPC-3D-S has to be selected.
New Feature: qualitymask using the ROMEO quality map with a manual threshold
Change: The input syntax has slightly changed (the phase input is now with -p). However, it should be backwards compatible and still take the phase as first or last argument without the -p specifier.
Change: 4D input requires echo times to avoid wrong configurations.
Improvement: The echo times can be given with spaces like [1, 2, 3] or [1 2 3]
Improvement: Mask files with wrongly set slope in NIfTI header are correctly read in.
Improvement: New error messages with hints on wrong inputs

v3.2.0

New Feature: MCPC-3D-S phase offset correction can be used in bipolar mode to remove even-odd phase gradients
New Feature: The program can perform coil combination prior to unwrapping. The channels have to be in the 5th dimension and MCPC-3D-S has to be selected.
Change: The input syntax has slightly changed (the phase input is now with -p). However, it should be backwards compatible and still take the phase as first or last argument without the -p specifier.
Improvement: The echo times can be given with spaces like [1, 2, 3] or [1 2 3]
Improvement: Mask files with wrongly set slope in NIfTI header are correctly read in.

v3.1.4

The header of the weights output was corrupted and has been fixed in this version.