Updated Deploy yml

.github/workflows/deploy.yml

@@ -82,10 +82,21 @@ jobs:
           cd ..
           cp -r ./tofsh/output/ fsh_files
           gofsh fsh_files
-          rm -r ./input/fsh
-          cp -r gofsh/input/fsh ./input/fsh
+          rm -r ./input/fsh/instances
+          cp -r gofsh/input/fsh/instances ./input/fsh
           sushi .
 
+    # commit to current repo
+      - name: "Overwrite fsh files"
+        run: |
+          git config --global user.email "github-actions[bot]@users.noreply.github.com"
+          git config --global user.name "github-actions[bot]"
+          git config --global credential.helper cache
+          git add ./input/fsh
+          git commit -a -m "$(date): update redcap2fhir resources"
+          git push
+
+
 
       - name: "Download the IG Publisher"
         shell: bash