Build the IG #68
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Build the IG | |
| on: | |
| release: | |
| types: [published] | |
| jobs: | |
| deploy: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| ref: ${{ github.event.pull_request.head.ref }} | |
| - uses: actions/setup-java@v3 | |
| with: | |
| distribution: "temurin" | |
| java-version: "17" | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.10' | |
| # Install ruby | |
| # https://github.com/ruby/setup-ruby | |
| - uses: ruby/setup-ruby@v1 | |
| with: | |
| ruby-version: "3.2" | |
| # Install Jekyll | |
| # https://jekyllrb.com/docs/installation/ubuntu/ | |
| - name: "Install Jekyll" | |
| shell: bash | |
| run: | | |
| gem install jekyll bundler | |
| jekyll -v | |
| # Install node if SUSHI is needed | |
| # https://github.com/actions/setup-node | |
| - name: "Install Node.js" | |
| uses: actions/setup-node@v3 | |
| with: | |
| node-version: "18" | |
| # Install SUSHI if needed | |
| - name: "Install SUSHI" | |
| shell: bash | |
| run: | | |
| npm install -g [email protected] | |
| sushi --version | |
| sushi . | |
| # Install GOFSH if needed | |
| - name: "Install GOFSH" | |
| shell: bash | |
| run: | | |
| npm install -g [email protected] | |
| gofsh --version | |
| # Install reproschema2fhir if needed | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: kind-lab/reproschema-to-fhir | |
| submodules: 'true' | |
| path: './tofsh' | |
| ssh-key: ${{ secrets.SSH_DEPLOY_KEY }} | |
| # Call Gofsh if needed | |
| - name: Checkout | |
| shell: bash | |
| run: | | |
| cd ./tofsh | |
| pip install -e . | |
| touch .env | |
| git submodule update --init --recursive | |
| echo -e "CODESYSTEM_URI = https://voicecollab.ai/fhir/CodeSystem/" >> .env | |
| echo -e "VALUESET_URI = https://voicecollab.ai/fhir/ValueSet/" >> .env | |
| echo -e "QUESTIONNAIRE_URI = https://voicecollab.ai/fhir/Questionnaire/" >> .env | |
| echo -e "QUESTIONNAIRE_LANGUAGE = en" >> .env | |
| echo -e "FHIR_QUESTIONNAIRE_MODE = AnswerOptions" >> .env | |
| ./job.sh | |
| cd .. | |
| cp -r ./tofsh/output/ fsh_files | |
| gofsh fsh_files | |
| rm -r ./input/fsh/instances | |
| cp -r gofsh/input/fsh/instances ./input/fsh | |
| sushi . | |
| # commit to current repo | |
| - name: "Overwrite fsh files" | |
| run: | | |
| git rev-parse --abbrev-ref HEAD | |
| git config --global user.email "github-actions[bot]@users.noreply.github.com" | |
| git config --global user.name "github-actions[bot]" | |
| git config --global credential.helper cache | |
| git branch | |
| git add ./input/fsh | |
| git commit -a -m "$(date): update redcap2fhir resources" | |
| git push | |
| - name: "Download the IG Publisher" | |
| shell: bash | |
| run: | | |
| mkdir ./input-cache | |
| curl -sS -L https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -o ./input-cache/publisher.jar | |
| chmod +x ./input-cache/publisher.jar | |
| - name: "Create IG" | |
| shell: bash | |
| run: | | |
| java -jar -Xms4096M -Xmx6144M -XX:NewRatio=1 -XX:-UseAdaptiveSizePolicy input-cache/publisher.jar ig.ini | |
| mkdir -p ./git-output/vbai-fhir | |
| cp -r ./output/* ./git-output/vbai-fhir | |
| - name: "Deploy to kind-lab.github.io" | |
| run: | | |
| git config --global user.email "github-actions[bot]@users.noreply.github.com" | |
| git config --global user.name "github-actions[bot]" | |
| git config --global credential.helper cache | |
| git clone --depth 1 https://${{ secrets.GH_VBAI_PAT }}@github.com/kind-lab/kind-lab.github.io website | |
| mkdir -p website/vbai-fhir | |
| cp -r ./git-output/vbai-fhir website | |
| cd website | |
| git add vbai-fhir | |
| git commit -a -m "$(date): update vbai-fhir" | |
| git push |