v2.1.0

This release substantially improves the quality of the dataset, correcting a number of validation errors. This release corresponds to the code used to generate MIMIC-IV on FHIR v2.1 published on PhysioNet. This release also aligns the GitHub release version number (v2.1.0) with the PhysioNet published version number (v2.1.0). Previously code v2.0 was used to generate PhysioNet data v1.0.

What's Changed

Note: PR #115 has a substantial number of changes.

• Updates to Quickstart and Minor Db bugfix by @Evan8456 in #85
• Added validation for fhir tables and updated quickstart documentation by @Evan8456 in #86
• add MIT license by @alistairewj in #90
• Validation fixes by @johngrimes in #115
• fix: medicationCodeableConcept for MedicationRequest from list to object by @joennlae in #93
• Update SQL script that exports FHIR resources to NDJSON files. by @piotrszul in #118

Changes prior to this release

The following changes are included in this code release, but were done prior to the publication of MIMIC-IV on FHIR v1.0 on PhysioNet.

• Multiprocessing added to py_mimic_fhir by @alexmbennett2 in #69
• Full scale MIMIC in FHIR by @alexmbennett2 in #70
• Mimic ED by @alexmbennett2 in #72
• Test row counts by @alistairewj in #73
• Validation Scaling with GCP by @alexmbennett2 in #74
• US Core Removal Fixes by @alexmbennett2 in #75
• Added GCP FHIR validation by @alexmbennett2 in #76
• Update url to mimic.mit.edu/fhir by @alexmbennett2 in #77
• update url to include /fhir/mimic by @alexmbennett2 in #78
• New test cases by @alexmbennett2 in #79
• Load BigQuery with data and validate by @alexmbennett2 in #80
• Profiler updates to py_mimic_fhir by @alexmbennett2 in #81
• Revalidate bundles from GCP by @alexmbennett2 in #82
• Updates for MIMIC-IV v2.2 by @alexmbennett2 in #83

New Contributors

• @Evan8456 made their first contribution in #85
• @johngrimes made their first contribution in #115
• @joennlae made their first contribution in #93
• @piotrszul made their first contribution in #118

Full Changelog: v2.0...v2.1.0

MIMIC-IV-on-FHIR Demo v2.0

MIMIC-IV-on-FHIR Demo v2.0 is based on the MIMIC-IV Demo v2.0. Contains all the scripts to build the demo dataset

MIMIC-IV-on-FHIR v1.0

Scripts for building MIMIC-IV-on-FHIR demo dataset