Release 0.3.0
This is release 0.3.0 of ncbi-genome-download.
This is a release breaking backwards compatibility a bit, hence the new minor
relase number. If you are just using the command line tool, everything should
still work, but note that some of the options have changed to their plural
forms. If you are using the API, you need to update your code to use the new
plural forms of the option names.
This version also no longer supports Python 2.7.
In addition, this version also contains some contributed features or bugfixes:
gimme_taxa.py
now is installable, thanks Istvan (@ialbert)- We no longer break on FTP entries without an FTP path, thanks Paul (@openpaul)
- We now raise an error if you try to download metagenomes from RefSeq.
Thanks again, Paul (@openpaul) - Updated Chinese README file, thanks James (@jamesyangget)
- We no longer leak pool workers when running parallel downloads, thanks
Gerrit (@Wrzlprmft)
Detailed changes:
Gerrit Ansmann (2):
Using context manager for pool. This should at least partially fix Issue #120.
Restructuring to avoid excessively long and complicated line.
Istvan Albert (1):
made gimme_taxa.py an installable script
James Yang (3):
fix and update translation
Update README-CN.md
Update README-CN.md
Kai Blin (18):
core: Make get_name_and_checksum not skip the wrong files
config: Init section before group
main: Print nicer error messages on invalid arguments
config: Add tests for new 'no metagenomes in refseq' check
chore: Update contributor map
chore: Drop python2 compatibility code
chore: Style pass to make flake8 happy
chore: Update supported Python versions in README
chore: set up GitHub workflow for testing and publishing
chore: Add vim config directory to gitignore
core: Make acceptable --refseq-categories a list
chore: Use py3 to test in drone as well
core: Fix default for new list-based --refseq-category parameter
core: Split strain parsing from strain label generation
core: Also allow to filter by strain
core: Also show strain in the dry-run listing
core: Break the API so all list types now use the plural form.
Bump version number to 0.3.0
Paul Saary (2):
move na check into filter function
raise warning if refseq metagenome is requested, as there is no such thing at the moment