Skip to content
This repository has been archived by the owner on Feb 18, 2024. It is now read-only.

Reduced re-alloc in parquet #1337

Open
wants to merge 2 commits into
base: main
Choose a base branch
from
Open
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
36 changes: 31 additions & 5 deletions src/io/parquet/read/deserialize/binary/basic.rs
Original file line number Diff line number Diff line change
Expand Up @@ -305,11 +305,37 @@ impl<'a, O: Offset> utils::Decoder<'a> for BinaryDecoder<O> {
}
}

fn with_capacity(&self, capacity: usize) -> Self::DecodedState {
(
Binary::<O>::with_capacity(capacity),
MutableBitmap::with_capacity(capacity),
)
fn with_capacity(&self, capacity: usize, page: &Self::State) -> Self::DecodedState {
match page {
State::Optional(_, values) => (
// this is an upper bound - we may not consume the whole page.
// we do not know how many nulls are there, so we do not know how many
// valid items are there to discount over the sequence.
Binary::<O>::with_capacity(capacity, Some(values.num_bytes())),
MutableBitmap::with_capacity(capacity),
),
State::Required(values) => (
// this is an upper bound - we may not consume the whole page.
Binary::<O>::with_capacity(capacity, Some(values.values.num_bytes())),
MutableBitmap::new(),
),
State::FilteredRequiredDictionary(_)
| State::FilteredRequired(_)
| State::RequiredDictionary(_)
| State::Delta(_)
| State::FilteredDelta(_) => (
Binary::<O>::with_capacity(capacity, None),
MutableBitmap::new(),
),
State::FilteredOptionalDictionary(_, _)
| State::FilteredOptional(_, _)
| State::OptionalDictionary(_, _)
| State::OptionalDelta(_, _)
| State::FilteredOptionalDelta(_, _) => (
Binary::<O>::with_capacity(capacity, None),
MutableBitmap::with_capacity(capacity),
),
}
}

fn extend_from_state(
Expand Down
2 changes: 1 addition & 1 deletion src/io/parquet/read/deserialize/binary/dictionary.rs
Original file line number Diff line number Diff line change
Expand Up @@ -59,7 +59,7 @@ fn read_dict<O: Offset>(data_type: DataType, dict: &DictPage) -> Box<dyn Array>

let values = SizedBinaryIter::new(&dict.buffer, dict.num_values);

let mut data = Binary::<O>::with_capacity(dict.num_values);
let mut data = Binary::<O>::with_capacity(dict.num_values, None);
data.values = Vec::with_capacity(dict.buffer.len() - 4 * dict.num_values);
for item in values {
data.push(item)
Expand Down
2 changes: 1 addition & 1 deletion src/io/parquet/read/deserialize/binary/nested.rs
Original file line number Diff line number Diff line change
Expand Up @@ -85,7 +85,7 @@ impl<'a, O: Offset> NestedDecoder<'a> for BinaryDecoder<O> {

fn with_capacity(&self, capacity: usize) -> Self::DecodedState {
(
Binary::<O>::with_capacity(capacity),
Binary::<O>::with_capacity(capacity, None),
MutableBitmap::with_capacity(capacity),
)
}
Expand Down
16 changes: 14 additions & 2 deletions src/io/parquet/read/deserialize/binary/utils.rs
Original file line number Diff line number Diff line change
Expand Up @@ -36,10 +36,11 @@ impl<O: Offset> Pushable<usize> for Offsets<O> {

impl<O: Offset> Binary<O> {
#[inline]
pub fn with_capacity(capacity: usize) -> Self {
pub fn with_capacity(capacity: usize, values_capacity: Option<usize>) -> Self {
let values_capacity = values_capacity.unwrap_or(capacity.min(100) * 24);
Self {
offsets: Offsets::with_capacity(capacity),
values: Vec::with_capacity(capacity.min(100) * 24),
values: Vec::with_capacity(values_capacity),
}
}

Expand Down Expand Up @@ -86,6 +87,7 @@ impl<'a, O: Offset> Pushable<&'a [u8]> for Binary<O> {
self.values.reserve(additional * avg_len);
self.offsets.reserve(additional);
}

#[inline]
fn len(&self) -> usize {
self.len()
Expand Down Expand Up @@ -117,6 +119,10 @@ impl<'a> BinaryIter<'a> {
pub fn new(values: &'a [u8]) -> Self {
Self { values }
}

pub fn num_bytes(&self) -> usize {
self.values.len()
}
}

impl<'a> Iterator for BinaryIter<'a> {
Expand Down Expand Up @@ -149,6 +155,11 @@ impl<'a> SizedBinaryIter<'a> {
remaining: size,
}
}

pub fn num_bytes(&self) -> usize {
// iter is formed as [length as i32][bytes]
self.iter.num_bytes() - 4 * self.remaining
}
}

impl<'a> Iterator for SizedBinaryIter<'a> {
Expand All @@ -164,6 +175,7 @@ impl<'a> Iterator for SizedBinaryIter<'a> {
self.iter.next()
}

#[inline]
fn size_hint(&self) -> (usize, Option<usize>) {
(self.remaining, Some(self.remaining))
}
Expand Down
15 changes: 10 additions & 5 deletions src/io/parquet/read/deserialize/boolean/basic.rs
Original file line number Diff line number Diff line change
Expand Up @@ -136,11 +136,16 @@ impl<'a> Decoder<'a> for BooleanDecoder {
}
}

fn with_capacity(&self, capacity: usize) -> Self::DecodedState {
(
MutableBitmap::with_capacity(capacity),
MutableBitmap::with_capacity(capacity),
)
fn with_capacity(&self, capacity: usize, page: &Self::State) -> Self::DecodedState {
match page {
State::Optional(_, _) | State::FilteredOptional(_, _) => (
MutableBitmap::with_capacity(capacity),
MutableBitmap::with_capacity(capacity),
),
State::Required(_) | State::FilteredRequired(_) => {
(MutableBitmap::with_capacity(capacity), MutableBitmap::new())
}
}
}

fn extend_from_state(
Expand Down
15 changes: 10 additions & 5 deletions src/io/parquet/read/deserialize/dictionary/mod.rs
Original file line number Diff line number Diff line change
Expand Up @@ -142,11 +142,16 @@ where
}
}

fn with_capacity(&self, capacity: usize) -> Self::DecodedState {
(
Vec::<K>::with_capacity(capacity),
MutableBitmap::with_capacity(capacity),
)
fn with_capacity(&self, capacity: usize, page: &Self::State) -> Self::DecodedState {
match page {
State::Optional(_) | State::FilteredOptional(_, _) => (
Vec::<K>::with_capacity(capacity),
MutableBitmap::with_capacity(capacity),
),
State::Required(_) | State::FilteredRequired(_) => {
(Vec::<K>::with_capacity(capacity), MutableBitmap::new())
}
}
}

fn extend_from_state(
Expand Down
16 changes: 11 additions & 5 deletions src/io/parquet/read/deserialize/fixed_size_binary/basic.rs
Original file line number Diff line number Diff line change
Expand Up @@ -194,11 +194,17 @@ impl<'a> Decoder<'a> for BinaryDecoder {
}
}

fn with_capacity(&self, capacity: usize) -> Self::DecodedState {
(
FixedSizeBinary::with_capacity(capacity, self.size),
MutableBitmap::with_capacity(capacity),
)
fn with_capacity(&self, capacity: usize, page: &Self::State) -> Self::DecodedState {
match page {
State::FilteredOptional(_, _) | State::OptionalDictionary(_) | State::Optional(_) => (
FixedSizeBinary::with_capacity(capacity, self.size),
MutableBitmap::with_capacity(capacity),
),
State::FilteredRequired(_) | State::RequiredDictionary(_) | State::Required(_) => (
FixedSizeBinary::with_capacity(capacity, self.size),
MutableBitmap::new(),
),
}
}

fn extend_from_state(
Expand Down
17 changes: 12 additions & 5 deletions src/io/parquet/read/deserialize/primitive/basic.rs
Original file line number Diff line number Diff line change
Expand Up @@ -194,11 +194,18 @@ where
}
}

fn with_capacity(&self, capacity: usize) -> Self::DecodedState {
(
Vec::<T>::with_capacity(capacity),
MutableBitmap::with_capacity(capacity),
)
fn with_capacity(&self, capacity: usize, page: &Self::State) -> Self::DecodedState {
match page {
State::Optional(_, _)
| State::OptionalDictionary(_, _)
| State::FilteredOptional(_, _) => (
Vec::<T>::with_capacity(capacity),
MutableBitmap::with_capacity(capacity),
),
State::Required(_) | State::RequiredDictionary(_) | State::FilteredRequired(_) => {
(Vec::<T>::with_capacity(capacity), MutableBitmap::new())
}
}
}

fn extend_from_state(
Expand Down
14 changes: 12 additions & 2 deletions src/io/parquet/read/deserialize/primitive/integer.rs
Original file line number Diff line number Diff line change
Expand Up @@ -127,8 +127,18 @@ where
}
}

fn with_capacity(&self, capacity: usize) -> Self::DecodedState {
self.0.with_capacity(capacity)
fn with_capacity(&self, capacity: usize, page: &Self::State) -> Self::DecodedState {
match page {
State::Common(page) => self.0.with_capacity(capacity, page),
State::DeltaBinaryPackedRequired(_) | State::FilteredDeltaBinaryPackedRequired(_) => {
(Vec::<T>::with_capacity(capacity), MutableBitmap::new())
}
State::DeltaBinaryPackedOptional(_, _)
| State::FilteredDeltaBinaryPackedOptional(_, _) => (
Vec::<T>::with_capacity(capacity),
MutableBitmap::with_capacity(capacity),
),
}
}

fn extend_from_state(
Expand Down
6 changes: 3 additions & 3 deletions src/io/parquet/read/deserialize/utils.rs
Original file line number Diff line number Diff line change
Expand Up @@ -387,7 +387,7 @@ pub(super) trait Decoder<'a> {
) -> Result<Self::State, Error>;

/// Initializes a new [`Self::DecodedState`].
fn with_capacity(&self, capacity: usize) -> Self::DecodedState;
fn with_capacity(&self, capacity: usize, page: &Self::State) -> Self::DecodedState;

/// extends [`Self::DecodedState`] by deserializing items in [`Self::State`].
/// It guarantees that the length of `decoded` is at most `decoded.len() + remaining`.
Expand Down Expand Up @@ -416,7 +416,7 @@ pub(super) fn extend_from_new_page<'a, T: Decoder<'a>>(
decoded
} else {
// there is no state => initialize it
decoder.with_capacity(capacity)
decoder.with_capacity(capacity, &page)
};
let existing = decoded.len();

Expand All @@ -429,7 +429,7 @@ pub(super) fn extend_from_new_page<'a, T: Decoder<'a>>(
while page.len() > 0 && *remaining > 0 {
let additional = chunk_size.min(*remaining);

let mut decoded = decoder.with_capacity(additional);
let mut decoded = decoder.with_capacity(additional, &page);
decoder.extend_from_state(&mut page, &mut decoded, additional);
*remaining -= decoded.len();
items.push_back(decoded)
Expand Down